Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 4 4.5e+04 -4.8 1.3 16 18 22 25 21 26 0.44

2 3 9.7e-10 1.1e-05 26.6 9.3 1 16 31 46 31 51 0.89

3 3 0.0073 81 4.6 10.2 1 12 61 71 61 84 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	4	4.5e+04	-4.8	1.3	16	18	22	25	21	26	0.44
2	3	9.7e-10	1.1e-05	26.6	9.3	1	16	31	46	31	51	0.89
3	3	0.0073	81	4.6	10.2	1	12	61	71	61	84	0.77

Coding Sequence: ATGTGTTACGGGAACCACGAGGAACGCAAGACGATACCGTGCTCACAAGAGGAGTTCTCGTGCGGTCTGCCGTGTGGCAAGCCGCTGCCGTGCGGCAAACACACGTGTATTAAAACCTGCCATAAAGGACCCTGTGATACTGAGAAatGCAAGCAGGGCTGTCGAGAGAAGCGACCGCGGTGCGGCCACGAGTGCGGCAGCCCGTGTCACGCCGACAACGGCGGCGTGTGTCCCGCCGCGACTGCGTGCCGCCGTGCCGTCGCCGTCACGTGTCCGTGCCTGCGACGGAAGGCGACCCGGGCCTGCGCCGACAACATGCGAGACTATGACAAGACATTGAACGCGCTAGCTGCGACCAGAATACAAGAGGGTGGGTCGGTGGACATATCTGAAGCACAACGATCGAGCGCCATGCTTAAAACGCTAGAATGCGACGAAGAGTGTTCGCAGGAGGCTAGAGCTCGGCAGCTGGCCTTAGCGCTACAGATCCGCAACCCGGACGTGTCTGCTAAACTGGCGCCTCGTTATAGCGACTCGCTGCGGGCGGCCGCTGCGCGAGAACCCGCTTTCGCGCAACACGTACACGACAAGCTCACAGACCTGGTGCAACTCGCCAAGAAGtcAAAGCAAAAGACGCGCGCACACTCGTTCCCGTCTATGAATCGCGCCAAACGCCAGTTCATCCACGAACTGTGCGAACACTTCGGTTGCGAGAGCGTCGCGTACGACGCAGAGCCCAACCGGAACGTAGTTGCGACCGCCGACAAGgagaagTCGTGGTTACCGGCCATGAGTATCCTGGAGGTTCTCGCGCGGGAGGCGGGAAAACGTCGTGTGCCAGGCCCTGTGCTAAGGACCTCTGGCGCCGCCGCGACATCTTCTCACACCACCAAGTCATCAGGTGGTTGGGCTACCCTCACCTCTACGAACGCATGGGCCATCCGCAGCCAACCCTCGGCGTCCACCACAGCTGTCACCAGGACGAAACCTGAACCGAAACCGGAGAACAAGATTGACTACTTCGACAACCCACCAGACAACTAG
Protein Sequence: MCYGNHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCIKTCHKGPCDTEKCKQGCREKRPRCGHECGSPCHADNGGVCPAATACRRAVAVTCPCLRRKATRACADNMRDYDKTLNALAATRIQEGGSVDISEAQRSSAMLKTLECDEECSQEARARQLALALQIRNPDVSAKLAPRYSDSLRAAAAREPAFAQHVHDKLTDLVQLAKKSKQKTRAHSFPSMNRAKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSILEVLAREAGKRRVPGPVLRTSGAAATSSHTTKSSGGWATLTSTNAWAIRSQPSASTTAVTRTKPEPKPENKIDYFDNPPDN

Sequence clustering based on sequence similarity using MMseqs2