Basic Information

Insect: Leptidea juvernica
Gene Symbol: -
Assembly: GCA_949711685.1
Location: CATIXL010000004.1:6539280-6547670[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.06 8.5 8.3 2.4 2 23 491 514 490 514 0.90

2 8 0.032 4.4 9.2 12.2 1 23 528 551 528 551 0.97

3 8 0.0069 0.97 11.3 0.4 1 23 556 580 556 580 0.90

4 8 0.4 56 5.7 0.3 2 23 601 625 600 625 0.92

5 8 0.0011 0.16 13.7 0.3 2 22 631 651 630 651 0.95

6 8 6.1e-05 0.0086 17.7 0.7 1 23 706 727 706 727 0.97

7 8 1.3e-05 0.0018 19.9 2.7 1 23 733 756 733 756 0.97

8 8 0.00052 0.073 14.8 2.4 1 19 772 790 772 791 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.06	8.5	8.3	2.4	2	23	491	514	490	514	0.90
2	8	0.032	4.4	9.2	12.2	1	23	528	551	528	551	0.97
3	8	0.0069	0.97	11.3	0.4	1	23	556	580	556	580	0.90
4	8	0.4	56	5.7	0.3	2	23	601	625	600	625	0.92
5	8	0.0011	0.16	13.7	0.3	2	22	631	651	630	651	0.95
6	8	6.1e-05	0.0086	17.7	0.7	1	23	706	727	706	727	0.97
7	8	1.3e-05	0.0018	19.9	2.7	1	23	733	756	733	756	0.97
8	8	0.00052	0.073	14.8	2.4	1	19	772	790	772	791	0.97

Sequence Information

Coding Sequence: ATGCTGTCTCCACACGAAGATGACGACGACACCCATCTCTGCATCAAGTGCAATGCGACTGTCATCGGAATTGACAACTACGTAAAACACAGGAAAGAGCGCTGCGGGAAGCTGAAGAATGATAAGTCCCTGGCTTCTATCGACCCACTGGAACCGACATACAGCCTCGGGGCAGATGTGTTTTTCCAATCATTGGAACTCCAGAGCAGTGTCAAGAAATCATCTTCCCTCTCCAGGTTGACTCCTCCTAATCCTATATACAAAACGACGGTAGACACTAAAACAACTCCAGCTATTGCTTCAACTTCGCGAGATATACCAAGAATGAGTCCACTAGAAAATAACCTCAGGGGAGAGGATTGGATCGGGGGTCACAGCTTAAAAATAGAAACAAGTGAGGACAATCAAATGAAATTGATAAAAGCTGTAGCCAGCATTAGTGGTGCTGCGAAAAAAGATCCACCATCATCATCTTATATATCTTATACTGATTACAAAGGAGACGATGATTTAGAAGAATCAGATGATACTGAAGACGAGGAGGAAGAGGAACCGTCGCAAAGTGTTAAATGGAAACCACCACCAAACTATACAGGTGGAAAGTGGCGCCCTGATTCGCCAGACCATGATGATTGGGAGCCAGATCCAGATACACACGACCGAGATGATGACTATGACGCACCTCCTCCTAGTCACACAAAAGGGAAATGGGTCCCTGGTGCCCCTGAGAAGACACAGATAATGCAAACTACTATACAATCCAAGGGCTCTGTTCAATATTGGTGTGGACCTTGTAATCGAAGATTAGGCTCCAGAGCTATTTATgataaacatcttatgtctaattTACACATGCGAAAAGTACTTCCCGAAAATGAATTAGAATTTTCCGGACACTTAGAGCCTATACGAAATGTTACTGAAAAATCACCAGACAAACGAATTAATCGTCCTTCGTTGTTTGTTAATGATAGTATGTACTCACAGACACAGAGAAAACGGCAAAAATCCACTAAACCAAAATGTAATCCCAAGGTTATAAAGCCAAAGAGAAAGAGGAAACACATTTTCGTAAGTTGTTCTGGTTGCAAATCAAGAGTTAGAAGTCATCTAATGGGAAAGCATCTCATATCACATTATCATTTTAGAAAAGCAATTGATATGAAGAGTTTGACGTACAGACAACTTATCTTAGATAACATGGACGCAATAGTTCACCAGTCTCCCTTTCAATGCAGTCCATGCAAATTCTATACTAATTGGCATTCAAATTTTATGCAGCATTGGTCCTCTGAAAATCATGAACGTGTTACATCAGCAATGGATGGTCTATACTGGTGCTCCTTCTGTAAATTTGAATGTTCTGCATCGCAGGAAATGCTCGAACACTTGTCAAGTTTGGATCACAGTGAAGTGGTCGCCGTTATAAATAGATCTATGCCTATACTAATCAGAAAGAAGACAATTATACGTTGCGAAACTTGTCATATTTCGTTTCGGTATAATTTTGAGGCGAAACAGCATTGGAAAAAGACTTCCCATGAGTTAGCGTATACTGCTACCGACACTTATCAGGAACTGCATAAATGTCAACACTGTCATCATAAATTCAAATCATCGGTAACGCTTTGCGCTCATTTGAAATCAGAGCACAAAGAGAAAGCATTTCTGTGTCTAGTCTGTTCCAAGGTGTTCAACTCATCAGCCGACGCAAAGCAACATCGGCAGACATCAGAACATCGAATCAGGACGAAGGAAAAGTTGATAGCCCGTGGTCTATGTTCAAAAGATTTACGCAAACGTTGCCCATACTGTCCCCGACAAACCATGCTCAAAAATGTGATTGAACTCCGAGACCATATAAGAAGATTACATCCTAACATACGAAAAAAgTGCTACAAATGCGGAAAGGCGTTTATTCTATCacaagaagtgactcggcataTAAGAAGCAATGCTTGTCAATGTGCAGATCCCAATACTGTCAGCACTTCGGCTCTCTGGAGCTGCAGCCAATGTCTGTTCACAACAGATTCCCAAGCAGAATGTTTTTTCCATGAAATCCTTCATAGCGAGCCAATAACACAAATCATTGGCGAAAATAAAGTTCTGAAGTATGCATGTCCTCTCTGTGATAAGGCGTTCAATAAGAAGTCATTGCGGGATCATCTAAAGCAGCACACGTTCGAGAGGCCTTTCGTTTGTTCCCTCTGCGGGGCCAACTTCACGAGACAGAGCAGTTTAAATAATCACCACAAGAGCAAGCACGATATGCCTGCACGTCCGACGGAGACCGAAGTCGCTGCAAAAGAATTTAGATGTCATCAATGTAGGAAGAAATTTACTGACCGAAAAGAACTGGAGAGCCACGGCCCGTCGTGTCAGATATTAGAACGGGAATGTCCATTTGAGGATTGCACGTTCAAAGGTTCCTCATTGTCGCAACTAATCCGGTGA
Protein Sequence: MLSPHEDDDDTHLCIKCNATVIGIDNYVKHRKERCGKLKNDKSLASIDPLEPTYSLGADVFFQSLELQSSVKKSSSLSRLTPPNPIYKTTVDTKTTPAIASTSRDIPRMSPLENNLRGEDWIGGHSLKIETSEDNQMKLIKAVASISGAAKKDPPSSSYISYTDYKGDDDLEESDDTEDEEEEEPSQSVKWKPPPNYTGGKWRPDSPDHDDWEPDPDTHDRDDDYDAPPPSHTKGKWVPGAPEKTQIMQTTIQSKGSVQYWCGPCNRRLGSRAIYDKHLMSNLHMRKVLPENELEFSGHLEPIRNVTEKSPDKRINRPSLFVNDSMYSQTQRKRQKSTKPKCNPKVIKPKRKRKHIFVSCSGCKSRVRSHLMGKHLISHYHFRKAIDMKSLTYRQLILDNMDAIVHQSPFQCSPCKFYTNWHSNFMQHWSSENHERVTSAMDGLYWCSFCKFECSASQEMLEHLSSLDHSEVVAVINRSMPILIRKKTIIRCETCHISFRYNFEAKQHWKKTSHELAYTATDTYQELHKCQHCHHKFKSSVTLCAHLKSEHKEKAFLCLVCSKVFNSSADAKQHRQTSEHRIRTKEKLIARGLCSKDLRKRCPYCPRQTMLKNVIELRDHIRRLHPNIRKKCYKCGKAFILSQEVTRHIRSNACQCADPNTVSTSALWSCSQCLFTTDSQAECFFHEILHSEPITQIIGENKVLKYACPLCDKAFNKKSLRDHLKQHTFERPFVCSLCGANFTRQSSLNNHHKSKHDMPARPTETEVAAKEFRCHQCRKKFTDRKELESHGPSCQILERECPFEDCTFKGSSLSQLIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875784; iTF_00876627;
90% Identity: iTF_00876627;
80% Identity: -