Basic Information

Insect: Leptidea juvernica
Gene Symbol: ush
Assembly: GCA_949711685.1
Location: CATIXL010000009.1:14413845-14421304[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0026 0.37 12.6 0.4 1 21 150 170 150 171 0.95

2 8 8.6e-05 0.012 17.3 0.9 1 23 211 233 211 233 0.98

3 8 0.23 32 6.5 1.0 3 20 264 281 263 283 0.93

4 8 0.0042 0.59 12.0 0.8 2 21 521 540 520 541 0.95

5 8 0.0067 0.94 11.3 0.2 3 20 570 587 568 589 0.91

6 8 8.9 1.2e+03 1.5 0.0 2 23 617 638 616 638 0.92

7 8 0.0084 1.2 11.0 1.3 1 23 644 666 644 666 0.99

8 8 0.3 42 6.1 1.0 2 20 754 772 754 774 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0026	0.37	12.6	0.4	1	21	150	170	150	171	0.95
2	8	8.6e-05	0.012	17.3	0.9	1	23	211	233	211	233	0.98
3	8	0.23	32	6.5	1.0	3	20	264	281	263	283	0.93
4	8	0.0042	0.59	12.0	0.8	2	21	521	540	520	541	0.95
5	8	0.0067	0.94	11.3	0.2	3	20	570	587	568	589	0.91
6	8	8.9	1.2e+03	1.5	0.0	2	23	617	638	616	638	0.92
7	8	0.0084	1.2	11.0	1.3	1	23	644	666	644	666	0.99
8	8	0.3	42	6.1	1.0	2	20	754	772	754	774	0.92

Sequence Information

Coding Sequence: ATGTCCGACGCAGCCATTTGCAATGGCGTATTGAATGACGAGAACAACTTGAACAAGACAAAGGTGTCTCATTCTATAATAGTCGATGGTTATCAGTTCGGATTCGACGAAACAAAACATGAACAGCGTCCGAGTGAGGACGAGGAATGGGGAAACGAGAACGAGGCGATGCCGGGAGAACCTCGCACGCCGAGTTCAGGGGGCGAGCGAGCGTCGAGCGGCGCCGCGTCTCCTACTTCGGGGAGTTCTCCTGCTGCCTCGCCTCCGCGCCTGCGGCTGAATACCAGCCTGGCGACCGACCCGGCGCTTGCACCACAAGCGACGTTACTGAAGCGTGAATCGCCATCCCCTTCGCCGCCGCCACCGCCAACACAACAGCCGAAAGACTTTATACCGATTACCGTGAATAACTTCCCAGCTTTATTCCCTGCTGTTGCCCCTCCGGGTTATACGTGCACACCCTGCGGTATAAGATACTCTTCTCTGAGCACACTCCAAGCTCATCAGCAACATTACTGCTCCAAACGAAAAACTAAGGCCGAAAACAACGACTCTTCTACGGAGCAAGCGGCTGACGATTCAAGTGGCGATGCTAAATGTTCAAGACCTCCAGAAGCCTCAAGAAAACAATACGCGTGTACATACTGTTCCTATAGTGCTGATAAAAAAGTTAGTTTAAACCGTCACATGCGAATGCATTCATCGTCACCATTAAGCAGTGGAACGCCCGTACCAGCACCTACCTCAAACGGTGAAGCAACAGAGAGCTCGCCAACCCAAGACAGACACTGCGTCGACTGCGACATTCACTTTAGTTCGGTAAAAACGTACCGCGCACACAAAGACTATTACTGCAACACTAGGCAAGTTGTCAAGCCAGCATTGGCTGCTAGAACAGGTTCAATAACTTCAGGCTCCGCCCCTCCATCGCCAGGAACTAGTCCACCGGCGCAAAATCAGTACGCCCTCGCGTTACCAACCAATCCAATTCTCATCGTACCGTATTCATTGTTTCGGAGTGCCAGCACCTTGCCTGGTACAACTTTACCAGATCCCGACACGCCGTGCTTTCTGTTGCCGAATGGCACATTCCAACCAATAAGTCGGGCGTTGGCAAATTCAAACACAGAGGGTAAAGAAGCCGAAGTGTTAAAGTCAGCAAACCGGCCTCGTGAACCATCAAGGGACACAACCACACCATTAGATCTGAGCGTGCGCCGCACACCTGAATCAGTCACAACTGATGAACACGAGAAAGAAAACAGACTTCGTTCAACGACACCAGAACAGATAGTCTGTGCTCCGTCATTACCCGGGTCTCCTGCCACACCCTCACCGTCAAGAAGATCATCTTCACCAAGCGGTGAGAGTTCACCTAAGCGAAGACGGCGAAACTCAAGGGATCCTACTCCAAAGCCACTAATACCATCGCCTCATGATGATAAATTTTCAGGTTTGGTTCCTCAATCGATAATACCACCAGCTCTGGCCCTACGACTCGCAACAGAATTGCCCGTTACCACGTCATCACCTCAAGTTTTGGTCAAACAAGGTGTATCCAAATGCAAAGAGTGCAATATTGTATTCTACAAGTATGAAAACTATCGCATTCACAAGCGGAACTACTGCTCTGCTCGAGGTGGTGAAGAACGCGCAAGTCCTGCGCCCCCGGAGCCCGGGCCTCCGCCGCAGTACCGCCAACTGATATGTCTAGCGTGCGGCATACATTTTAGTTCCTTAGATAATCTCACCACACACCAATCGTTCTATTGCACGAAGAGAGACACGCGTTCTCCGAGAAGTTTGCCAGAAGTGGCGAGACCGGCCTCGAATTCTGAGGGAGGATGGAAATGTCCTTGCTGCGATGTCGTTTCCCCTACTGCAGCCGCAGCACAGAGACACGTGGAAGGCCATGGTGCAGTAAAAGCATTCCGGTGCACAATCTGTCGATACCGGGGCAACACGCTGAGAGGAATGCGGACCCACATACGCATGCACTTCCGGGACAAGCCTGCAGATCTGCAGGAGGAGAGCTTTATCTCGTGCGTGGTGGAGGACGACAGTCGTGAAGCTTCGTCTCCGAGCCCGGCCGGCGGCGAGCGCGTACACCGCTGCGGCAGCTGTGCGTACACGTCCACTCGTCTGGGATTACATGGTGGTCACCTCCCGGAGCCCGAGCGAGCGTcccccgcgcccgcgcccgtcGCCCCGCCCGCTCTCGTCAAGAAGGAGCCCGAGCTCGACGAGGAGACCCCCAACTACTGCAAGTCGTGCAACATCTCCTTCAAATACGTCAACACTTACAAAGCGCATAAACAGTTCTACTGCACCGCAGCCAATCAGGACGCCGCGGCCAATAACAATCTACCCGCACGCGTCACTGATACGCCCGTTGTCTAG
Protein Sequence: MSDAAICNGVLNDENNLNKTKVSHSIIVDGYQFGFDETKHEQRPSEDEEWGNENEAMPGEPRTPSSGGERASSGAASPTSGSSPAASPPRLRLNTSLATDPALAPQATLLKRESPSPSPPPPPTQQPKDFIPITVNNFPALFPAVAPPGYTCTPCGIRYSSLSTLQAHQQHYCSKRKTKAENNDSSTEQAADDSSGDAKCSRPPEASRKQYACTYCSYSADKKVSLNRHMRMHSSSPLSSGTPVPAPTSNGEATESSPTQDRHCVDCDIHFSSVKTYRAHKDYYCNTRQVVKPALAARTGSITSGSAPPSPGTSPPAQNQYALALPTNPILIVPYSLFRSASTLPGTTLPDPDTPCFLLPNGTFQPISRALANSNTEGKEAEVLKSANRPREPSRDTTTPLDLSVRRTPESVTTDEHEKENRLRSTTPEQIVCAPSLPGSPATPSPSRRSSSPSGESSPKRRRRNSRDPTPKPLIPSPHDDKFSGLVPQSIIPPALALRLATELPVTTSSPQVLVKQGVSKCKECNIVFYKYENYRIHKRNYCSARGGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSFYCTKRDTRSPRSLPEVARPASNSEGGWKCPCCDVVSPTAAAAQRHVEGHGAVKAFRCTICRYRGNTLRGMRTHIRMHFRDKPADLQEESFISCVVEDDSREASSPSPAGGERVHRCGSCAYTSTRLGLHGGHLPEPERASPAPAPVAPPALVKKEPELDEETPNYCKSCNISFKYVNTYKAHKQFYCTAANQDAAANNNLPARVTDTPVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00050390;
90% Identity: iTF_00876616;
80% Identity: -