Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00026 0.036 15.8 1.7 2 23 170 191 169 191 0.97

2 6 0.0014 0.2 13.4 2.9 2 22 197 217 196 219 0.87

3 6 0.0014 0.2 13.5 0.2 2 23 226 247 225 247 0.97

4 6 0.00027 0.038 15.7 0.9 1 23 253 275 253 275 0.97

5 6 0.0053 0.74 11.6 0.5 2 23 282 303 281 303 0.97

6 6 2.8e-05 0.0039 18.8 0.3 1 23 310 333 310 333 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00026	0.036	15.8	1.7	2	23	170	191	169	191	0.97
2	6	0.0014	0.2	13.4	2.9	2	22	197	217	196	219	0.87
3	6	0.0014	0.2	13.5	0.2	2	23	226	247	225	247	0.97
4	6	0.00027	0.038	15.7	0.9	1	23	253	275	253	275	0.97
5	6	0.0053	0.74	11.6	0.5	2	23	282	303	281	303	0.97
6	6	2.8e-05	0.0039	18.8	0.3	1	23	310	333	310	333	0.98

Coding Sequence: ATGGGCAATTATAAGTCTAAAGAAGTTAACAATAATGTGGCTTTGGCCCAGGCCCAAGTTACTACGGTGCAAgTAGAAATAAATGACACATTATCTCATGAAATTTGTTTACATTGCATAAGATTTATAAATAGGTCAATAAAATTTCGTAGAAAATGTGAACAGGTGCAGGagatattagaaaataaatgtaatattaaagttttaagcGAATTGAAGATAGATCCAGATTTGACTAATATAGATATTGCAGATACATTGAGTAATTCAGATGATGATTTTAAGGATTATGATGACAATATTACCTTAGATACATTCCAAATTAATAATAGACCAACGGAAAATGATAAAGCATCACATATTGAAAAGGAGGAAATTAAAGAacaatttattgatgaaagtaTCGCTTTAGATAAGAAAGAGAGGAGTTCAGTTCGTAAAAGAGTGAGTCGTAAAATAAAAAGCACAGATGGAAAAGAAAAGAGAAATGGCGATAGAGGCGAAGTGGAGTGtgaatattgtcataaaattttaacatcGAAATTGTCTCTACGGAAtcattacaaaatacatactgGCTTTGATGTTGTTTGTGAGCATTGTGGCAAAAAGTTCATAACACGTCGTTTATTATTGATGCACTGCCGAGCGAAGCACGGGTATGAGAAGACCGATAAATGTTCATACTGTGACTATACTGCTTCTAACGCAGAACAAGTCAAGatccATGAAAGACTGCATACGGGAGAGAAGCCGTACGTATGTAAGGAGTGTAACGCCGGGTTTCACAGAAAGAGTAGCTACCTGCAACACGTTGCTATCCATTTGCCCGAGAAAACTGTGCAGTGCGACCAATGTCCGGCGCGTTTTAAGTCAGTAACGTTAATGAGAATACACAAGAACCGGCACAGAGCGCCACAGTACAGGTACAAATGTGGCATTTGTGACAACAGTTTCGCGAGACGACGTAACGCCGCTCGACACTTGCAAAGAGTCCACGCTATGTCGCCAGACCATCACATCCACAGGCAGAATATCAACTGA
Protein Sequence: MGNYKSKEVNNNVALAQAQVTTVQVEINDTLSHEICLHCIRFINRSIKFRRKCEQVQEILENKCNIKVLSELKIDPDLTNIDIADTLSNSDDDFKDYDDNITLDTFQINNRPTENDKASHIEKEEIKEQFIDESIALDKKERSSVRKRVSRKIKSTDGKEKRNGDRGEVECEYCHKILTSKLSLRNHYKIHTGFDVVCEHCGKKFITRRLLLMHCRAKHGYEKTDKCSYCDYTASNAEQVKIHERLHTGEKPYVCKECNAGFHRKSSYLQHVAIHLPEKTVQCDQCPARFKSVTLMRIHKNRHRAPQYRYKCGICDNSFARRRNAARHLQRVHAMSPDHHIHRQNIN

Sequence clustering based on sequence similarity using MMseqs2