Ljuv006473.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000006.1:2236787-2260941[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.006 0.85 11.5 0.8 1 23 347 369 347 369 0.98 2 11 0.011 1.6 10.6 10.0 1 23 376 398 376 399 0.94 3 11 0.0092 1.3 10.9 1.3 1 23 403 425 403 425 0.97 4 11 0.065 9 8.2 4.4 1 23 430 453 430 453 0.98 5 11 0.0089 1.3 10.9 0.2 1 23 457 480 457 480 0.87 6 11 5 7e+02 2.3 0.1 6 21 497 512 494 517 0.88 7 11 0.13 18 7.3 0.7 2 23 543 565 542 565 0.96 8 11 0.0042 0.59 11.9 1.8 2 19 581 598 580 599 0.95 9 11 0.00028 0.039 15.7 3.4 1 23 608 630 608 630 0.98 10 11 2.7e-06 0.00038 22.0 0.8 1 23 637 659 637 659 0.98 11 11 1.2e-05 0.0017 19.9 2.2 1 23 665 688 665 688 0.93
Sequence Information
- Coding Sequence
- ATGCCATCTTGTAGTATTATACAGTGTAGCATACGGAAGGACAAAAACAAAGACAGATTGTCTTTCCACAGATTTCCAACGGATGAAGTTTTAAAGGAAAAGTGGATAGAGGCTGTTGGTAAAGACAATCTGAATCCACGGCATAACCAATGGAATATCTGTGCTCAGCACTTTAAAGAAAGTGATTTCTGTGAAACACTTGGTGCTCTACGAGTTGATTCAGTTCCGTCAGTTTTTCCGATTGAAGTAACAGTACTTAAAATTGAAGATGCCATACCAGTACAGGTTTGCAAAATGTGCCTAATAACTGGCGTCAAAATGCATGATATGATTGAAAGAGACCTTCATCAGATGTATATAGACATAACAGGACTGCCTATGTACTCAGATGATTATTTGCCACAGTTTTCTTGCGTGGAGTGTACGCAGCGACTGAGGAATTGCCACCAGTTCAGATTCAAGTGTCTGAAAGCCAATGCAATTATGCAAGACTTACTTGATAAGGATGACTGTGTCAgcattcaaaatattcaaaaaatagaTCGTgaatcaaattgtttaaaaagtaaTCTCACAAATGATTTCTTCACAAATCACTACGATCTTGAATTGGAATATGAGCCAAAAATCGAAAGTTTGAAGTCAGAGGATGATGGTGAAAGTAATCATAACGATGATGTTCTACACACGGAAGATGTGAAAACTGATGATATGAAAGACGAGAGTGGTACGACAAGTGATGATGATATAAGTTCCGAAAGTGATGGAAGCAGTGATTATACTTTAGATGCACATAAGAAAAAGAGAACGAATGGAAAAGTGCTTGCCAACTTAAAGCGTAAGAGAAACACGACCAAGAAACAAACTGTGAAGAAGGTTACAAAGAAAGAGGTCGAACCTAAAGTTGACAGGCGTCGCAAACCTTTTTTAAATGGCGACGTAAAGGATGCACTCTTCACGATAACAGAGTTGTCTCAAGAGGAGCAAATAGCCGAAATTCTCAAGAAGCAGGAGTCTGCAAATTTCCTGAACGCAGTTTTCAAATGCACGCTGTGTTTTAAAGGATTTCTGGATGAGGGTGCTTTTAAAGCGCATATGACAAGGCATACAGatCAATGTGGAGTGCACGAATGCAAGATTTGTAAAGTACACTTCAAACATTCCCACGCGCTCAGGAAGCACATAACGGCTCATCACTCGCAGCGGTATTCCTGCAACGACTGTCCGTACGTCACAACGCATCGAACAACAGCGAGACTTCATGAAAGATGGCATAAGGGAACCAAATATCAATGCACACATTGTACCGAGCAATTCGATAAAATGACAACTTACATGGGTCACCTACGAAAGAAGCACCCTTCGGATTTTGTCTGTGAGATATGCGGCTACTCGTTTGTGAGCGAAAAGGGAATAGATCTACACAAGAAATTGAAACATCGACTCGATAATTGTGagATTCCCGACAATGGACCGTTATGTGGCCCCTGTAATATAAGATTCCAGTCCAAAGAAGCTTTGGACGTACATTTGAGTGTCTCCGGAAAGCACAGCAATGAGCCAAAGCCGAacgagaaaaaaaagaaaactgtcTACCGGCCCATAACTCGGTCACAAGAAGCAATTTCCTGCGAACAGTGCGGTGTACAGTTAAAGAGCGCACGCGCATACCACGCCCATTTCAGGAGGATGCACCCAGACAAGAACCGCACAAATTATCCTTCGATGAAGGCGCCGTGTATGTGTGAGGTCTGCGGGAAAATATTTCAGaaacagACACACTTGAGGGAACATAACTGGCTTCACACGGGTGAGCGACCCTACACGTGTCCGATTTGTAAGAAGTCGTTTCGTGCCAAGTGCTACTACAAACTCCACGTCCAGATTCACAATGAAGATAGGACGTACTACAAGTGTAAAGTGTGCAACAAGAACTTTACAACGCCGGCTAATAGACTCAAGCATATGGCCATACACACGGGTGAGATGCGGTACGAATGTGACGTGTGCAAGAAACGTTTCAAACAGGCCAGCGAGCTCAAGTCCCACTACGACCACATCCACCTGAAGAAACCCTGGCCCAAGCGGATGAGGAAGAAGAAGGAGgAATCGATAGTCGTAGATCCCGACCATCCGATGTGGTTGAGTTGCAACCAGTTTGTAGGTGACACCGGGATTGTGGACACCAGGTCCCCAGAGTAG
- Protein Sequence
- MPSCSIIQCSIRKDKNKDRLSFHRFPTDEVLKEKWIEAVGKDNLNPRHNQWNICAQHFKESDFCETLGALRVDSVPSVFPIEVTVLKIEDAIPVQVCKMCLITGVKMHDMIERDLHQMYIDITGLPMYSDDYLPQFSCVECTQRLRNCHQFRFKCLKANAIMQDLLDKDDCVSIQNIQKIDRESNCLKSNLTNDFFTNHYDLELEYEPKIESLKSEDDGESNHNDDVLHTEDVKTDDMKDESGTTSDDDISSESDGSSDYTLDAHKKKRTNGKVLANLKRKRNTTKKQTVKKVTKKEVEPKVDRRRKPFLNGDVKDALFTITELSQEEQIAEILKKQESANFLNAVFKCTLCFKGFLDEGAFKAHMTRHTDQCGVHECKICKVHFKHSHALRKHITAHHSQRYSCNDCPYVTTHRTTARLHERWHKGTKYQCTHCTEQFDKMTTYMGHLRKKHPSDFVCEICGYSFVSEKGIDLHKKLKHRLDNCEIPDNGPLCGPCNIRFQSKEALDVHLSVSGKHSNEPKPNEKKKKTVYRPITRSQEAISCEQCGVQLKSARAYHAHFRRMHPDKNRTNYPSMKAPCMCEVCGKIFQKQTHLREHNWLHTGERPYTCPICKKSFRAKCYYKLHVQIHNEDRTYYKCKVCNKNFTTPANRLKHMAIHTGEMRYECDVCKKRFKQASELKSHYDHIHLKKPWPKRMRKKKEESIVVDPDHPMWLSCNQFVGDTGIVDTRSPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00874534; iTF_00876237; iTF_00876547; iTF_00875672; iTF_00875376;
- 90% Identity
- iTF_00874534;
- 80% Identity
- iTF_00874534;