Ljuv037605.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010009316.1:1-3778[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.2e-06 0.0012 20.5 2.1 1 23 148 170 148 170 0.99 2 10 0.0023 0.33 12.8 0.1 3 20 217 234 215 236 0.91 3 10 3.7e-05 0.0052 18.4 0.5 3 23 263 284 261 284 0.96 4 10 0.47 65 5.5 0.4 2 21 305 324 304 325 0.87 5 10 0.13 18 7.3 0.8 1 23 335 357 335 357 0.95 6 10 0.18 25 6.8 0.9 2 23 375 396 374 396 0.97 7 10 1.1e-05 0.0015 20.1 0.8 2 23 434 456 433 456 0.96 8 10 0.00044 0.061 15.0 3.8 2 23 501 523 501 523 0.97 9 10 3.4e-05 0.0047 18.5 1.8 1 23 573 596 573 596 0.98 10 10 3.9 5.4e+02 2.6 0.2 15 23 663 671 656 671 0.87
Sequence Information
- Coding Sequence
- ATACAAGACGGTGATGGATTACCAGACAAAATATGTTCTGAGTGTATTCAAAAGTTGAGCAGTGCTCACATATTCAAACAGCAATGTGAACGCTCTGATCAAGAACTCCGACGTAACTATGTCCCACCACCAGGCTTCACTTCTCCCTCGGAACAAAATAGACAAAGCAGTGATTCCGCGTTTTCAACACAAACAGATAGCTCAAAACCATCCTCGAGTCAAGTCACCCCTATAAGCAGAACTAGAAAGAGAAGCTCAGAAAGTATTGATAATGCTTCGAGTAGCGGCGTATCTCATGACTATAATCCAAAGACCACGAAGCGTGTTGAAGAATTGCGGCAATCTCAAAAAAGAGCAAAACTTAAAACTAATTCTGATTCTGACTATGAATATAGCGGATCAGTTTATTCAGGGGGGACAGATTCAGATGAGCCTATAGAATACAAATGCGATATATGCTCGAAAGTTTTCAACAAATATCAAAGTTTAAATGCCCATAAGAAGACACATAAGCGTAGTAGTGATTCGGGTATGTCGCCGCAGCCCTCGAGAAATTCTCTTACTGCCCCGTCCCCTATCCCCGTGTTGTCTACCTCACCTGATTATCTTGAGGCTAAAGATGCTAATGATTGTGAGGACAAAATTAATTGTGAAAAGTGTGGCAAGTcatttaagttaataattatgttgAAACGACACAAGGAAGTTTGTGGAAAACTTATTGACAAAGAGCTGAAAATATCACTTGAACCGATCGATTCAACGCCAAAACAAAATGCTATTGACTGCAAAATGTGcacaacaaaatttaaaacagtggCTACTCTCGAAAAACACATGAGAGTCGTACATGCAGCAGTCCTTAAACGTGAATCCGATGTGAAAGTTTCGGCAGATGGTAAACCAATTGTGCCCTGTTTCTACTGTAATAAAccatataatgattattattctCATACAGCACATTTCAGAGTTTGTCCAAAAAGGGATGATTCATTGTCCTTTACGTGTACTGTATGTGGTAAATATTTGCTCAAGAAAGCAAGTTATTATGTTCACATTAAAGAACATTTTCATCCTTTCAAAGACTTAAATCCATCTGCTGATTCTCCCCGAACTCTCAAATGTCGTTTCTGTAAAGCCAAGTTGGCATCACACGAATTGCTAATATCACATTTAGCTACACACATGAACGATGAAAATGATTTTGAAGATGTAGAATCTCGAAACAGTACTATAGAAGATTCAGGGTCTGTACattcaaattacaataattcAAAGGTCTCTACAGGACCTCTAAAATGTCCCTATTGTGATGCTCGTTTCAAATATAAGAAAGCACTAGAAACACATCAAATCACCAAACATTCTGTAGACCCAAAAAATGTAAGCATTAAATCAGAACCTCCCGATTTAAAGGAATCTCCGTACCATTTGGGTGAGCCTTTGAATCATGAGCAATATGACAGTGATTCTAGTCAAGGTGACGATAATGATAACACTTGCGATATATGCGAACGACAATTCTCTTATAAACGTCTGCTGATTCATCACAAGCGTACAAAGCACAATATATCGTCGGGAACGAAAAGGGCAAAGATAACACTGAAGGATTGTTTGGTTCGGTGTCTTATTTGCGATCTGGAGATGAAAGTGAGCGCGATCAATGAGCACAACCAAAAACACATTACGGCCAACATAAAGCCTCGTAATTTGTATACGTGTACAGAATGTAAGCAACAGTTCAAGAGCTGCAGCGGACTTGctaatcatattaaaatagtgCATAGGTTACAACTTAAGCCGCAAGCGCCGCAAGTTAGCGATACAACACCGGATTTGGCggatttttttgaagtcgttgtGACAAAGGCGGAGCCCCTGGAAATCCAGAGTCACAACGGCTTTCAAGAGGGATCCGCACCATCTGTTAACATGAGCGGCTTTACATGCCCCACGAGCAACAAACAAATGCCTACTCTTATTTCCCTTAAGAGACACATGAATTGGCACACCAATGTTGGAGGGAAAATTGAAAAACAGTACGAGTGTTTTGTCTGTAACgag
- Protein Sequence
- IQDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFTSPSEQNRQSSDSAFSTQTDSSKPSSSQVTPISRTRKRSSESIDNASSSGVSHDYNPKTTKRVEELRQSQKRAKLKTNSDSDYEYSGSVYSGGTDSDEPIEYKCDICSKVFNKYQSLNAHKKTHKRSSDSGMSPQPSRNSLTAPSPIPVLSTSPDYLEAKDANDCEDKINCEKCGKSFKLIIMLKRHKEVCGKLIDKELKISLEPIDSTPKQNAIDCKMCTTKFKTVATLEKHMRVVHAAVLKRESDVKVSADGKPIVPCFYCNKPYNDYYSHTAHFRVCPKRDDSLSFTCTVCGKYLLKKASYYVHIKEHFHPFKDLNPSADSPRTLKCRFCKAKLASHELLISHLATHMNDENDFEDVESRNSTIEDSGSVHSNYNNSKVSTGPLKCPYCDARFKYKKALETHQITKHSVDPKNVSIKSEPPDLKESPYHLGEPLNHEQYDSDSSQGDDNDNTCDICERQFSYKRLLIHHKRTKHNISSGTKRAKITLKDCLVRCLICDLEMKVSAINEHNQKHITANIKPRNLYTCTECKQQFKSCSGLANHIKIVHRLQLKPQAPQVSDTTPDLADFFEVVVTKAEPLEIQSHNGFQEGSAPSVNMSGFTCPTSNKQMPTLISLKRHMNWHTNVGGKIEKQYECFVCNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -