Basic Information

Insect: Leptidea juvernica
Gene Symbol: -
Assembly: GCA_949711685.1
Location: CATIXL010000025.1:6922832-6923944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.16 23 7.0 2.2 1 22 148 169 148 172 0.90

2 7 0.0042 0.58 12.0 0.2 2 23 178 198 178 198 0.94

3 7 9.2e-06 0.0013 20.3 1.1 1 23 204 226 204 226 0.98

4 7 0.00012 0.017 16.8 1.5 1 23 232 254 232 254 0.99

5 7 2.2e-06 0.00031 22.3 1.0 1 23 260 282 260 282 0.99

6 7 0.00017 0.024 16.3 1.3 1 23 288 311 288 311 0.97

7 7 4.3e-05 0.0061 18.2 3.4 1 23 317 340 317 340 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.16	23	7.0	2.2	1	22	148	169	148	172	0.90
2	7	0.0042	0.58	12.0	0.2	2	23	178	198	178	198	0.94
3	7	9.2e-06	0.0013	20.3	1.1	1	23	204	226	204	226	0.98
4	7	0.00012	0.017	16.8	1.5	1	23	232	254	232	254	0.99
5	7	2.2e-06	0.00031	22.3	1.0	1	23	260	282	260	282	0.99
6	7	0.00017	0.024	16.3	1.3	1	23	288	311	288	311	0.97
7	7	4.3e-05	0.0061	18.2	3.4	1	23	317	340	317	340	0.96

Sequence Information

Coding Sequence: ATGGGGCTGATACGacaattattacttatgaatatattaaaatgtaaacataATGGAAAGAAACTCAAATCTTCACAATGCCAATCAAACAGTCTAAAAGAAGAAACTGTTGCAAGTGAAAAGCAAATTTGTAGAGTATGTCTTAAAGATGGGGAAATACCTATATATGGAAACCACGAATATACAGACATATCTGAAGATCTACGAATATTTGctgatattgaaataattaaaagttgTAACTTGCCTACACATCTCTGCCAGGCGTGCTATTCTCTTCTACAAGGAGCAATGCTATTAAGAAAAACAGCACAAAAATCAGATAATATATTACATGGAGTAGATGTGGAACAAAGTGATAGTGACCATAATATGGACAATGATGATACTTTCTATGAGTTTCACACTAAAGCAGAGGAACCAGTAGCCGAAGTACGTGAATACAGTTGCAGGACGTGTGAGCTATCATTTTGCTCATTCAAGGAGTATGATGAGCACTTGTTGTCAGAAGAACATGAAAACATGAGACGCACTTGTCCAGTTTGCAATAAAAGCTATTcagcaatatattttaaacgGCATGTAGCATTACACAATGTTGAACATCCGTACATGTGTGATATTTGtgggaaaaaatttaatatacgagGACAATTTACCCGTCATAGAGTAACACATTTCATTGAGTTGCCATTTAAGTGTTCTCTTTGCCCATATCGGGGGAGGTTTAGTGAATCTTTGAAAATGCATATGAGGTCACACACTGGGGAAAAACCATACCAGTGTAGTCAATGTCCATCCAGATTTGTAAGTAAAAGTAATCTTAATAAACATGCATTAACACACAAGGGAGAACATGACTTTAAATGTGAGTCTTGCAGCCGTGGATTTTATACTAAAAGAGAGCTGGAATTACATTATAAAGTGGATCACACAGGCATAAAGGAACATGTTTGTAATATGTGTGGCAAAGCGTTTGGCCACAGGAAGCAAATGATGAAGCATCAACTCAAGGTACACAAGCGGCAGAAACTTAGAAGTGGAAGGATGCCATTATATTTACAAGCTGAGTCTAAGCTGCAACAAGATTATTATGAATCATGTATTAAATGA
Protein Sequence: MGLIRQLLLMNILKCKHNGKKLKSSQCQSNSLKEETVASEKQICRVCLKDGEIPIYGNHEYTDISEDLRIFADIEIIKSCNLPTHLCQACYSLLQGAMLLRKTAQKSDNILHGVDVEQSDSDHNMDNDDTFYEFHTKAEEPVAEVREYSCRTCELSFCSFKEYDEHLLSEEHENMRRTCPVCNKSYSAIYFKRHVALHNVEHPYMCDICGKKFNIRGQFTRHRVTHFIELPFKCSLCPYRGRFSESLKMHMRSHTGEKPYQCSQCPSRFVSKSNLNKHALTHKGEHDFKCESCSRGFYTKRELELHYKVDHTGIKEHVCNMCGKAFGHRKQMMKHQLKVHKRQKLRSGRMPLYLQAESKLQQDYYESCIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875645;
90% Identity: iTF_00875645;
80% Identity: iTF_00876525;