Ljuv006765.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000006.1:6405924-6430161[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 3.9 9.4 1.9 1 23 240 263 240 263 0.97 2 12 0.0037 0.51 12.1 1.8 1 23 271 293 271 293 0.97 3 12 3.1 4.3e+02 2.9 0.2 1 10 297 306 297 309 0.84 4 12 0.00013 0.018 16.7 1.5 1 23 323 346 323 346 0.97 5 12 0.0037 0.52 12.1 0.5 2 22 351 371 351 371 0.93 6 12 2.7e-05 0.0038 18.8 0.5 2 23 385 406 384 406 0.95 7 12 5.5e-05 0.0077 17.9 0.5 1 23 411 433 411 433 0.98 8 12 3.9e-05 0.0054 18.4 6.2 1 21 442 462 442 467 0.95 9 12 0.0069 0.96 11.3 1.9 1 23 475 498 475 498 0.89 10 12 0.02 2.8 9.8 0.2 1 23 504 527 504 527 0.87 11 12 0.0031 0.44 12.4 0.4 3 19 542 558 540 559 0.91 12 12 0.0042 0.59 11.9 0.9 1 23 572 595 572 595 0.98
Sequence Information
- Coding Sequence
- ATGAacgaaattaatataaacattgaaGGGTACAATGTTAACGGTATATGTGTTGGTTGTCTGTGCTACAAACGCAAAATGTTCTCGACcgacgaaataaaatattgctttaAGTTACTTGGTGATATCGATGTACCTGATGGCCTTACTATTCAAGTGTGCTGGGAGTGTAAGGCAGCTGTGGATAGGATATGTAAATTTCAACAACAAATAcagtattcatataatatactcATTAATTACTCTCGGAAGCATCCATACCTCTTATCACCGGATGATCTAGCAAAATATAGCTCAACCCGGCTGTGTTGTGATTACACAACACATGCTGTCGAAGACTTAAATGTATTGGATAAGTTGGTGAAGTCTGAGAATGAAGATAACTTGAATGTAGATCAAATGGGTGAAGAGGCAGAACTTAGTCCGAAAATCAAGTATGAACCCGAAGATGGCATACCGTCGGATTACGACAACGACGTCAAGGACTTCAGTCCTGCATCATCCGATGATGATAATATGTTGCTGGTGAACTTGAAGAAGAAAGTCAAGAAGGAGGAGAAGACCACAAAGAAGAgcaagaagaagaaaaaagaaACACAGAAACGGCGTCTCAAGAACCTTCCGGGCGAACTGATACAGCTGCACACGATGAGTGAAGCCGAAATGTGGATCGTTAGGGAGCAGGACATGGCGGCTGAAGCTTTTGTTTCGCTGAAGTACAAGTGCATGGACTGTCTCAGGAGTTATAACACGCAGAAACTGAGGGACGATCACATGAACAGCAAACATACTCGGAAAAAGGAGAATACACACCAGTGCGACATTTGCAAGGGCTACTTCATATCTAAAGATAATTTATCCTTACACAAGGAGCGACATCTATCGGCctataaGTGCCGGGAGTGTGGCCTGGTGTCGACAATGAAGATTATTATAATGGACCACGAGTGTGCCAAACGGAAGGGTTTCACCTGTGACCTATGCGATATGTCTTTTACATCAAATACTAAGCTGTCCTATCACCGAAACGTCAGTCACGAGCAGAAGCCACAGTGTGATTGTTGCGGTAAGGTGTTCGCTAACAAGATAACACTGGGACAACACATCCGGACTATGACGTCACAGAATAGCCCAAAAGAGAAGCTGTATCTTCCGTGTAGCGGCTGcaacaaaatattcaattctAAGAAAAGTTTACGATCACACGTGTCGATCCACGAAGGCATCAAGTATCCGTGCCAGATCTGCGGGAAGCTGTTCCAGTGGAAGAGGAACCTGGCGCGTCACATGAGGAACCACAGGGAACGCAACAACGGCATGATCTACAAGTGCCACGAGTGCGGGAAGAACTTCTCCAGCAGGGATTGTTACAACAATCACATGAAACTTAGCAAGAAACACGTATCCGAAAGCGCTCTGGAACACGCGTGCCAGTATTGCAGCAAGAAGTTCGCGAGCAAGTGGTGTCTGGTGGACCACGTGGACTGGGAGCATCTCAAGAGATTCAAATACCGCTGCAGCGTCTGTTATAAGCCTTTCAAGACAGCCAAGATAATGGTGGCCCATGTGAACAATATCCACGAACGTAAGAACAAACTAATGGAACAGGAAAGTGAACACCTGTGTGAAATCTGCGGGAAATCTTACAagACGGCTAAAAGACTGAAGGGTCATGTGTGGGCGATGCACACGAAACGTTCGGGGACCAAGAGCTACAAATGTGAACTATGCTCAGCTTCGTTCACCTGGCAGACCTCCATCTACAAACACATGAGGATGATGCATGATAACTGCAAACGGAAGcaAACTCGTCCGCTGTCTCCCAACAAGAGCGAGCCCTACCCGGACATCGAGCTGACGTCACGGGCGCCTTTCTTTCAGCCGAGCGTGGAGATCTGCCACGGGATAAACGCCGCCAACATTGTCTTCAAATGA
- Protein Sequence
- MNEININIEGYNVNGICVGCLCYKRKMFSTDEIKYCFKLLGDIDVPDGLTIQVCWECKAAVDRICKFQQQIQYSYNILINYSRKHPYLLSPDDLAKYSSTRLCCDYTTHAVEDLNVLDKLVKSENEDNLNVDQMGEEAELSPKIKYEPEDGIPSDYDNDVKDFSPASSDDDNMLLVNLKKKVKKEEKTTKKSKKKKKETQKRRLKNLPGELIQLHTMSEAEMWIVREQDMAAEAFVSLKYKCMDCLRSYNTQKLRDDHMNSKHTRKKENTHQCDICKGYFISKDNLSLHKERHLSAYKCRECGLVSTMKIIIMDHECAKRKGFTCDLCDMSFTSNTKLSYHRNVSHEQKPQCDCCGKVFANKITLGQHIRTMTSQNSPKEKLYLPCSGCNKIFNSKKSLRSHVSIHEGIKYPCQICGKLFQWKRNLARHMRNHRERNNGMIYKCHECGKNFSSRDCYNNHMKLSKKHVSESALEHACQYCSKKFASKWCLVDHVDWEHLKRFKYRCSVCYKPFKTAKIMVAHVNNIHERKNKLMEQESEHLCEICGKSYKTAKRLKGHVWAMHTKRSGTKSYKCELCSASFTWQTSIYKHMRMMHDNCKRKQTRPLSPNKSEPYPDIELTSRAPFFQPSVEICHGINAANIVFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00876487;
- 90% Identity
- iTF_00876487;
- 80% Identity
- -