Basic Information

Insect: Leptidea juvernica
Gene Symbol: -
Assembly: GCA_949711685.1
Location: CATIXL010000023.1:3515946-3529436[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0047 0.65 11.8 0.9 2 23 22 43 21 43 0.95

2 15 9.8e-06 0.0014 20.2 0.9 1 23 78 101 78 101 0.96

3 15 0.00047 0.065 15.0 4.3 2 23 104 125 103 125 0.96

4 15 1 1.5e+02 4.4 0.8 1 23 133 155 133 155 0.91

5 15 0.16 23 6.9 0.0 1 23 160 182 160 182 0.96

6 15 5.6 7.8e+02 2.1 0.2 2 23 210 232 209 232 0.90

7 15 0.00082 0.12 14.2 0.6 1 23 239 261 239 261 0.96

8 15 0.00012 0.017 16.8 0.0 1 21 267 287 267 288 0.93

9 15 0.91 1.3e+02 4.6 3.0 1 23 300 323 300 323 0.92

10 15 0.026 3.7 9.5 4.7 2 23 329 352 328 352 0.96

11 15 5.6 7.9e+02 2.1 1.3 3 23 360 380 360 380 0.94

12 15 0.2 27 6.7 0.1 1 14 385 398 385 404 0.84

13 15 4.9e-05 0.0069 18.0 1.5 1 23 413 435 413 435 0.97

14 15 1.4e-07 2e-05 26.0 1.3 1 23 441 463 441 463 0.98

15 15 6.4e-05 0.0089 17.7 3.1 1 23 469 492 469 492 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0047	0.65	11.8	0.9	2	23	22	43	21	43	0.95
2	15	9.8e-06	0.0014	20.2	0.9	1	23	78	101	78	101	0.96
3	15	0.00047	0.065	15.0	4.3	2	23	104	125	103	125	0.96
4	15	1	1.5e+02	4.4	0.8	1	23	133	155	133	155	0.91
5	15	0.16	23	6.9	0.0	1	23	160	182	160	182	0.96
6	15	5.6	7.8e+02	2.1	0.2	2	23	210	232	209	232	0.90
7	15	0.00082	0.12	14.2	0.6	1	23	239	261	239	261	0.96
8	15	0.00012	0.017	16.8	0.0	1	21	267	287	267	288	0.93
9	15	0.91	1.3e+02	4.6	3.0	1	23	300	323	300	323	0.92
10	15	0.026	3.7	9.5	4.7	2	23	329	352	328	352	0.96
11	15	5.6	7.9e+02	2.1	1.3	3	23	360	380	360	380	0.94
12	15	0.2	27	6.7	0.1	1	14	385	398	385	404	0.84
13	15	4.9e-05	0.0069	18.0	1.5	1	23	413	435	413	435	0.97
14	15	1.4e-07	2e-05	26.0	1.3	1	23	441	463	441	463	0.98
15	15	6.4e-05	0.0089	17.7	3.1	1	23	469	492	469	492	0.97

Sequence Information

Coding Sequence: ATGGCATCTACAAACACAAATCCATCCAAAACTAAGACAACAATTGACATTGTCGGTGGAATATATTGCAAGATATGTAGCAAGACatatggaaataaaaaagattatgATTCCCATTACCAGGAACACAGTAAAGATATTGAGTATACTTGTGTTGTCTGTCACAAGGATATATCTGGATATGCTAGCTTCCGCGGACATTGCTATACTAGCCATGTTATTAAAAACAGattcaaGTGTGAACAATGTTCCAAAACATTCTCCAAAATGTCTGCACTGAAGGATCACATAAACTTAATACATCAAAATCAATGCACAACTTGCAATAAAAAATTCTCAACCAAAAAAGAGctacatttacataaaataatccaCCGTAGCAACGATGGACCCCCATTCCAGTGTCAAGAATGCAAAATTACCTTGGACTCCTTAGATGCCTGCAAAACGCATGTAGATGTACATTTAACATTTACCTATTCATGCCCAATTTGTGAAGAGATTATACCCCAAAAGGAATTTGCTACGGATCATCTAAAACAACACTTTGGCAATGTAACTTCGGAACAAGTAATATATGAAACAATAAATTCGGCGAATACTGCTCTCGAAAAGCTTGGTGGGATTTCTTGTTACTTTTGCACCATGATATTGCCCACTAGATCTGAATTTGATGCACATTTTCTATATGAACATGGTGATGAAGACATATTGTATACATGTGTGGTGTGTGGAAAACCGTTTGATAAATATTCAAGTTTCAGTGAGCATGTCTACAACCATTTTACAAAAGGAAGATTTGCtTGTGATCTGTGTCCAAAATCGTTCCCACGTCTGTCTCTGCTCGTGACTCACATTTCAGTATGTGCAAACTCCGAGGATGGCAATAACGAACCGTTTGTCTGTATCCACTGCAATAAATGCTATGCCACTGAGCAGAGATTGGATTATCACTTGCAGAACGCTCACAAACAGCAAAACCTCAAGTGTCCGGAGCCAGGCTGTGATAAAATATTTGATAAATGCCACAAGTTCATTCTCCATCAACGCCACCACAACACAAACATGCAGAACTGGTGTCGTCAATGTGGAATGCTGTTTACTTCTCTCGTTTCCTGTGTGAAACATTTAGATATACACAAGAAGAAACATTTTATCTGTCCGGTTTGCAACAGACATTTTGCAGAGAAGTACATGATCACACCACATCTTCCACAACATTTTGAAACTACACTCCACATTTGCAATATTTGTGGCAAAGTCTACAATGCTAAGTTCCGTTTGATTCAACATATGAAAACCCATGCCGAGAAGAAAGGCTATAAATGCAATTACTGCCCCATTAGTTTCACAAATTCAGCAAATCTAGAGCAGCATATGCACATACATACGGGTGTTAAGCAATACCATTGTGATATTTGTGTCAAGTCATTCACATCATATccaaatttttataaacatatgaataaaatccacaaaattttattgaaaaaaactaCAACCCCGAAGAATATGCCCATTGGCGAAAATACCAATGAgaacttaaatgaaaataacaatCTTATACAAGATTTGAATGTTTGTATACAAAGTAATCATATTGACAGTCAGAATCATGATTTGGATTTAAATCAGAGCAGAGTTGATAACAATAATGAGTTAGACTTGGGTCCTGTGAATTTTGATGCAGAGAATGGTGAAAATTTGTCAGTCCATATTTTGTATGAACCAGATCCGGACTGTTTGGATGATACACATATGAATGCTAAAGAGTCATTGTTTGACACCGTTATGGATGATCAATACAAATCGATAGAAACTAACAGTACCCAAATAGATTACATCTCGACAACTGCTGTAGAACCAATAGAGATCAGTTCAAAAATCCCTCCAGAGTATGGACCAGAGTTCTCAAGCAACATTGACGGAACGAGCATTATATGTCTAGATGATCACGTCTTACCACATATTGACCCGTTGCTGCCTCATTTGGATCCTCTAATGGTAAAAAATGGTATAGATATGAATGATCCATTTAATATTACAGACGAGAAATGGGAGCCACCCATTATAACAATGTTCTATCCAGATTACCATGGTTATGAAATGTCTGAAACTAATAATATAGCGTCTATGATTAACGCtgacatattttaa
Protein Sequence: MASTNTNPSKTKTTIDIVGGIYCKICSKTYGNKKDYDSHYQEHSKDIEYTCVVCHKDISGYASFRGHCYTSHVIKNRFKCEQCSKTFSKMSALKDHINLIHQNQCTTCNKKFSTKKELHLHKIIHRSNDGPPFQCQECKITLDSLDACKTHVDVHLTFTYSCPICEEIIPQKEFATDHLKQHFGNVTSEQVIYETINSANTALEKLGGISCYFCTMILPTRSEFDAHFLYEHGDEDILYTCVVCGKPFDKYSSFSEHVYNHFTKGRFACDLCPKSFPRLSLLVTHISVCANSEDGNNEPFVCIHCNKCYATEQRLDYHLQNAHKQQNLKCPEPGCDKIFDKCHKFILHQRHHNTNMQNWCRQCGMLFTSLVSCVKHLDIHKKKHFICPVCNRHFAEKYMITPHLPQHFETTLHICNICGKVYNAKFRLIQHMKTHAEKKGYKCNYCPISFTNSANLEQHMHIHTGVKQYHCDICVKSFTSYPNFYKHMNKIHKILLKKTTTPKNMPIGENTNENLNENNNLIQDLNVCIQSNHIDSQNHDLDLNQSRVDNNNELDLGPVNFDAENGENLSVHILYEPDPDCLDDTHMNAKESLFDTVMDDQYKSIETNSTQIDYISTTAVEPIEISSKIPPEYGPEFSSNIDGTSIICLDDHVLPHIDPLLPHLDPLMVKNGIDMNDPFNITDEKWEPPIITMFYPDYHGYEMSETNNIASMINADIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00876464;
90% Identity: iTF_00875591;
80% Identity: -