Ljuv003903.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000003.1:27497648-27515308[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0029 0.4 12.5 4.0 2 23 189 211 188 211 0.94 2 11 0.41 58 5.7 0.2 6 23 221 238 219 238 0.94 3 11 1.4 2e+02 4.0 6.1 1 19 265 283 265 288 0.90 4 11 0.016 2.2 10.2 0.3 2 23 322 343 321 343 0.97 5 11 2.7e-06 0.00037 22.0 1.9 1 23 351 373 351 373 0.98 6 11 5e-06 0.0007 21.2 0.9 1 23 382 405 382 405 0.97 7 11 7e-05 0.0098 17.6 0.7 1 23 411 433 411 433 0.97 8 11 3.8e-06 0.00053 21.5 3.5 1 23 439 461 439 461 0.98 9 11 0.00059 0.083 14.6 0.9 1 23 466 488 466 488 0.97 10 11 3.3e-07 4.7e-05 24.9 2.1 1 23 494 516 494 516 0.98 11 11 8.2e-05 0.011 17.3 0.3 2 23 523 545 522 545 0.95
Sequence Information
- Coding Sequence
- ATggatttggcaaatttttgtCGCTTGTGCGGTAAAGAAGAAGACCTTTTGAAAGATCTCAACGATGAAAATAATATTGGTATACTAAAAATGGTGAAAGACCTCATACAAATAACAGTGACTGAAAATGATGAACTTCCTACAAAAGTATGCATACATTGTGAAGAAAAGTTAGTCTCCTTCCAGCTGTTTATTTTAGAATGTAACAAAGTTCAAGAAACATTTCAGAGTATGTGTTTGACAAATATTGGAGTAATAAAAGAAGAAAGTCCTTCTGCGAGGAAACCTCCTCATAATATTAAGGCAGAGgTAAAAGATGAATCTGTTGCTGCAAATGAAATAGAAACATTTCAGACGGATGATTTAATAGTTGAAGCTAGTTTCTACgatgctgatgatgatggtggaTTTAATACGGACTGTGAAAGTGATATTATCTCACTATCAACATTGAAACAAAGTGAAACAAAGTTAAATCAaagggaaaataaaaataatggaaagattaatatgtataaatgcAAGAATAATACTTCTCTAAATGTTAATGATTATGTTAAGATGTCCTGTGAAGAATGCTCCAAAACATTTAAGAACTGGCAAACATTTTGCTATCATGCTAAAAATAAACATACCCAGAAAGCGGTGGCATATTGTTTTTGTGGGTATGCTGTGACATCTAAGACCTTGCTCTTTGAACATTTAGCAGAACACCAAATTAAATTAGACTTGAAAAATGAAACAAGACTGGAAAAGACAAAATCTAAGATAAGGACTAGCGATTTAATAAAATTCGTTTGCGATTTTTGTAATAGGAAACATAGTAGCTGGTACTCTTTGGAGCGACATTGTCAGTACAAACACAACAGCAAACCCTCAGTGTACTGTGCATGTGGAGTACACAtcaactcaaaaactactatgTACAGCCATGTGGACAGTCACAGGAAACCTGACTGTATACGctGTGACAAATGTCCAAAGATCGCAAAAACAGTAGAAGAAATGGAGAAGCATAAAATGAGACATATACCAAAGAGAGATAGAGTATTTAAATGTCCGATGTGTGAAAAGCAGTTCAGGTCAAAGGATTTGTTAAAGTCACATGAAAAGTCTCACATTCCAATAGagcaaagaaaaatttataattgtgaAGTTTGCAATCTTAAGTTCACAACTCAGTCGTCTCTGATGTCCCACAAGCGCATCGTCCACGAGAAGATCAAGAGTTTCGTGTGCGACAAGTGCGGCTACTCGTGCGGCACGAACGGAGAGCTGCGACAGCACCGCGCCATACACAGCGACGATAAGCCATTCACCTGTCGCAAGTGTTCCAAGGCTTTCAAGACGTATTCTAATCTAAAGACGCACTTGGACACACACGAGGACACGTCCTACATCTGTTACGTGTGTAACCGCGTGTTGAACAGCAGGCGGACTCTACGTAAACATCTCACAGTACATGATAAtagttgtatgtatgtgtgcaaCTACTGTAACAAGTCATTCAAAAGAAAACAGACTCTCAAGGTACACGTACTGATGCACACCGGCGACAAGCCACTGTCATGCAAGTGGTGTGACGAGAGGTTTGCGTACGCGTCCACCTTGCGATCGCACCGCCTGCGGGCGCATCCGGATAAGTGCGCCGCACAATACAACAACGCGACCTATTCGACGGATAATATACAACaaGAGTACCTTAAGAACGAGGCAAGTCATGTCAACGCACTTAAGGGTGATTTGGAAATGCAGCCCTAG
- Protein Sequence
- MDLANFCRLCGKEEDLLKDLNDENNIGILKMVKDLIQITVTENDELPTKVCIHCEEKLVSFQLFILECNKVQETFQSMCLTNIGVIKEESPSARKPPHNIKAEVKDESVAANEIETFQTDDLIVEASFYDADDDGGFNTDCESDIISLSTLKQSETKLNQRENKNNGKINMYKCKNNTSLNVNDYVKMSCEECSKTFKNWQTFCYHAKNKHTQKAVAYCFCGYAVTSKTLLFEHLAEHQIKLDLKNETRLEKTKSKIRTSDLIKFVCDFCNRKHSSWYSLERHCQYKHNSKPSVYCACGVHINSKTTMYSHVDSHRKPDCIRCDKCPKIAKTVEEMEKHKMRHIPKRDRVFKCPMCEKQFRSKDLLKSHEKSHIPIEQRKIYNCEVCNLKFTTQSSLMSHKRIVHEKIKSFVCDKCGYSCGTNGELRQHRAIHSDDKPFTCRKCSKAFKTYSNLKTHLDTHEDTSYICYVCNRVLNSRRTLRKHLTVHDNSCMYVCNYCNKSFKRKQTLKVHVLMHTGDKPLSCKWCDERFAYASTLRSHRLRAHPDKCAAQYNNATYSTDNIQQEYLKNEASHVNALKGDLEMQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00875578;
- 90% Identity
- iTF_00876453;
- 80% Identity
- -