Ljuv027446.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptidea juvernica
Gene Symbol
-
Assembly
GCA_949711685.1
Location
CATIXL010000046.1:155441-169261[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.023 3.3 9.6 1.9 3 23 242 263 239 263 0.95
2 16 0.14 20 7.1 0.1 2 23 289 311 288 311 0.93
3 16 0.0023 0.32 12.8 0.6 1 23 333 355 333 355 0.97
4 16 0.00021 0.029 16.1 1.2 1 23 359 382 359 382 0.97
5 16 0.026 3.6 9.5 0.5 2 22 388 408 387 408 0.93
6 16 0.00014 0.02 16.6 1.7 1 23 415 438 415 438 0.95
7 16 0.16 23 7.0 0.1 2 23 506 528 505 528 0.91
8 16 9.1 1.3e+03 1.5 0.0 2 23 556 578 555 578 0.92
9 16 0.034 4.7 9.1 0.3 3 23 602 622 601 622 0.97
10 16 5.7e-08 7.9e-06 27.3 0.3 1 23 626 649 626 649 0.97
11 16 5.7 8e+02 2.1 0.6 3 19 655 671 654 674 0.79
12 16 0.06 8.4 8.3 1.2 3 23 683 704 681 704 0.88
13 16 0.0085 1.2 11.0 0.3 1 23 711 734 711 734 0.91
14 16 0.00046 0.065 15.0 1.7 2 23 740 761 739 761 0.96
15 16 0.0003 0.042 15.6 0.5 1 19 767 785 767 789 0.96
16 16 0.0011 0.15 13.8 1.9 3 23 797 818 795 818 0.97

Sequence Information

Coding Sequence
ATGGACGGTAAATCTAGTAATTGGCGGCCCGGCCCAAGCGTCTGCCGTTGTTGTCTCTCTGATGGATGTTACAAAGATATTGCGACTGAATATTTCTGGATGGGAAAGAGAGAAGTTTATGAAGAGATGCTTGTGGATACTCTTGGCTTAACGATATCCTTTGGAGATTCCAATGCACAACACAGCCAGAGTCGTCTCATATGTGAGACATGCATATCGCGGCTCCGAAACGCGACGGACTTCAAGAAACAAGTGAAAGAATGCGAGCAGACATTTCTACAGTACCTGAATCCCAGCACTTTGGATGTTGTTGAAGATGTTATTAGTCTTGAGAAAGAGGAAAAGCAGGTGACAGTCAAGGAGGAGAAGAGTCCTGACCATGGTGATGACTTCAACGACAACAATGATATTTTGGacgatgataatgatgatgatcTTGATGATCAACCACTGATGAACCTTGCGACTAAGGTGCCTAAGAAGGAATCTGTTGACATGTTCGACCTATTAGATAACGCAAAACCATTGGTCAAACGTAAATCAACCACAAAAACCAAAAGCACTTCGAGTAAAAAGGCCAAAATTAAAGAAACTAAAACAAAACCCAAGGAGAAACCGGAGAAAAAGAAGAAAGCCGCGACGAACGACCCGCGGAATAACGCCGAGATTATATTAAAAGAGACCACCGCGTTTCCCTTCAAACTGAACGATAAATGCGTACTGTGCCTTTTCTGCCACGACCAGTTCGAGGATCCTGAAGAATTCAGGCGGCACATGAGGGTGGAACATGAAAAGTTCAATCTGAAAGTAGCCTTCAACAGCGTCCCCAAACCCGAGTTCATTAAAGTCGATATAAGCAATTTGAATTGTCGCACGTGCGCAGAAACTTTTGACTCACTCGAGAATGTCGCGACACATTTGAAGGAAATTCACGGCAAACAAATCGACTGGGAGGCGAAGTTGGGCGTAATTCCGTACCGTCTTCAGTTAGACGTATACATATGCGTGATTTGCCAGAAAACCGTCCCCTCCTTGTTACACTTGAACCGTCATACCGTGACGCATTTTTGGACCCACGTCTGTCATGTTTGCGGGAAGCGGTATGTTGCTTCCACGGGATTGTTGAAGCACGTTCGCAGTATTCATCAGCAGTACGAAGTCAGCTGCAGAAGTTGCGGCAAAGTGTTCCCGAGCTATTCGGAGAAGGACAAACATCGGAGACGGTCTAAAGAGTGCATGATATACAGATGCACGCATTGTCCGGAAAGATTCAACGATTGGAAATCTCGGAAACAGCACATGGAGGCTGAGCATGGCTTAAGTAAACGCAGCAATCGTTGTGTTGAGTGTAACATTGACTTTGGATCGGGGATCGCGTACTATGAACATTTTAGACTCCGCCATTCGAGTGATTGCTTGACTTTGGTCAGAAGGTTAGTCGTGGCACGAAACAACGCCAAGGTAGTCTTGAAATATACGACGGCCTGCCCATTTAGAATACCCAGTAACTCAATGGTGTGCGTATATTGCTGCGAGAGCTATGACGACCCTGACGAGTACAGAGCGCATATGGCCGACGAGCATAAAACTTACAATGTACACACGGCCTTCGCGCATACACTGAGCAACTTCAATGAATATCTCAAGGTCGATTGCACAGATTTACGATGTCGCCTCTGCTTAGCCGCGTTCGATGGGATACAAGATGTAGCTAGACATCTGAAAGTAGAGCATAACAAGGAAATAGACACGGATGTCGATGTTGCCATGCAGATGTTTAGGTTAGGAACGGAGCGGTGGCTGTGCGCCTTCTGCGACATGAAGTACCCGACCCTCCGTGAATTGAGTCGTCACACGGCTAGCCATTACCACAAATACACCTGCGAGATTTGCGGCAAGTCTTATATCAATCCCGACAATCTAAAGAAACACTTAAAGTACGGGCATAGTGCATTGAAGATATGTGTCAAGTGCAAAGAGTGTTTTCCGAGTGTCGAAGCGAAGAGAGAGCATTCATTGACTTCGGAGAAATGCTGGCCGTTGGCCTGTAGTCATTGCAATCAGCGTTTTAGATCAAATAACGTGAAACGTGCCCATATTACTGAAGTACACGGCGAGGCGCCTAAAGTATACAAATGCCCAGAATGTGTGTTGGTTTTCGATAGGTGGCGACCGTACAGGACTCACTTCATCCTGACTCACACGAATGATACTATTTCCTGCCCTCATTGCAAACAGCGGTTTGATACAAAGCGTTCCCTGAGCGAGCACGTTGTCACGCACACTCAGGAGAAGTCATTTTCGTGCGATGTCTGTCTGAAAACGTTTGCGCGAAAGAAAAATTTGATCCAACACAGCTGGATACACAACGAGTACAAAAGGTTTGGGTGTAAATTGTGCAGTAAGCAGTTTAACCAGAGGGTCAGTTGGAAGACCCATATGAAGTCATACCATCCGGAATTAGTTGATTTTACATAG
Protein Sequence
MDGKSSNWRPGPSVCRCCLSDGCYKDIATEYFWMGKREVYEEMLVDTLGLTISFGDSNAQHSQSRLICETCISRLRNATDFKKQVKECEQTFLQYLNPSTLDVVEDVISLEKEEKQVTVKEEKSPDHGDDFNDNNDILDDDNDDDLDDQPLMNLATKVPKKESVDMFDLLDNAKPLVKRKSTTKTKSTSSKKAKIKETKTKPKEKPEKKKKAATNDPRNNAEIILKETTAFPFKLNDKCVLCLFCHDQFEDPEEFRRHMRVEHEKFNLKVAFNSVPKPEFIKVDISNLNCRTCAETFDSLENVATHLKEIHGKQIDWEAKLGVIPYRLQLDVYICVICQKTVPSLLHLNRHTVTHFWTHVCHVCGKRYVASTGLLKHVRSIHQQYEVSCRSCGKVFPSYSEKDKHRRRSKECMIYRCTHCPERFNDWKSRKQHMEAEHGLSKRSNRCVECNIDFGSGIAYYEHFRLRHSSDCLTLVRRLVVARNNAKVVLKYTTACPFRIPSNSMVCVYCCESYDDPDEYRAHMADEHKTYNVHTAFAHTLSNFNEYLKVDCTDLRCRLCLAAFDGIQDVARHLKVEHNKEIDTDVDVAMQMFRLGTERWLCAFCDMKYPTLRELSRHTASHYHKYTCEICGKSYINPDNLKKHLKYGHSALKICVKCKECFPSVEAKREHSLTSEKCWPLACSHCNQRFRSNNVKRAHITEVHGEAPKVYKCPECVLVFDRWRPYRTHFILTHTNDTISCPHCKQRFDTKRSLSEHVVTHTQEKSFSCDVCLKTFARKKNLIQHSWIHNEYKRFGCKLCSKQFNQRVSWKTHMKSYHPELVDFT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00875569;
90% Identity
iTF_00875569;
80% Identity
-