Basic Information

Insect: Leptidea juvernica
Gene Symbol: -
Assembly: GCA_949711685.1
Location: CATIXL010000001.1:18640178-18641955[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.16 22 7.0 1.2 1 22 176 197 176 199 0.82

2 10 0.034 4.7 9.1 0.2 1 23 205 228 205 228 0.91

3 10 2.4e-07 3.3e-05 25.3 1.8 1 23 234 256 234 256 0.97

4 10 9.4e-08 1.3e-05 26.6 5.4 1 23 262 284 262 284 0.99

5 10 1.1e-05 0.0015 20.1 0.1 1 23 290 312 290 312 0.97

6 10 2.9e-05 0.0041 18.7 1.3 1 23 318 340 318 340 0.98

7 10 6.2e-05 0.0087 17.7 1.0 2 23 428 450 427 450 0.95

8 10 0.046 6.4 8.7 3.7 1 20 456 475 456 478 0.84

9 10 1.1e-06 0.00016 23.2 1.7 1 23 483 505 483 505 0.98

10 10 0.013 1.8 10.5 0.0 3 23 514 534 512 534 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.16	22	7.0	1.2	1	22	176	197	176	199	0.82
2	10	0.034	4.7	9.1	0.2	1	23	205	228	205	228	0.91
3	10	2.4e-07	3.3e-05	25.3	1.8	1	23	234	256	234	256	0.97
4	10	9.4e-08	1.3e-05	26.6	5.4	1	23	262	284	262	284	0.99
5	10	1.1e-05	0.0015	20.1	0.1	1	23	290	312	290	312	0.97
6	10	2.9e-05	0.0041	18.7	1.3	1	23	318	340	318	340	0.98
7	10	6.2e-05	0.0087	17.7	1.0	2	23	428	450	427	450	0.95
8	10	0.046	6.4	8.7	3.7	1	20	456	475	456	478	0.84
9	10	1.1e-06	0.00016	23.2	1.7	1	23	483	505	483	505	0.98
10	10	0.013	1.8	10.5	0.0	3	23	514	534	512	534	0.92

Sequence Information

Coding Sequence: ATGGacgatttatttataatatcaaatttcAATACATTATGTCGTTTATGTCTATGTAAATGCAACTTCACAACATCGATATTTGGTAatgttgatgatgatggtgaCTCGGAAAGGTCTATAACCTCAAAAATAGCTGAATGTATTAATTTACAGATGGAACCTAATGATGGTCTTCCTGCTAGACTGTGCTATAAGTGTCTGTTTCAACTCAATGAGAGTGCTAAATTTAGAGCTCAATGCATGCAAACCGAATCTAAACTCAGACAAATAGTTAATCAATTAAGAGAGCATGATACATCTTATTCCtcagaaataaattataatggaTTTGACAACCAAAAAGTGAAAGATGAAAACTATATTGTTGAAGATAGTGTTGTTATGGTAGTAGATCCTAGTCTTGACTATGATTCTTCTGAAGAATCTGAAAATATTGAACATAATGAACCTGAAGCAATAGGAAATGATCAAATACAAGGACCGAATGACCACATTCAGGATTCATATCTAATGAAAAGTGTTTTTATGTGTCAGTATTGTGACCAAGCATTTATTTCTGAAGAAAAATGTAAAGATCATGAACAAGGAGTTCATGACCCAAATATACCATATAAATGTGTTGAATGTAGCATAAATTTTTCTGAACGGAGCTTATTTATTGGTCATAATAAAGCCGTTCATAGAAGTGACAAACCATACCAATGTCCAGAATGTGATAAATGCTTTGGAAGGCGTTCAGATTTAAGAAAGCATTCTATTGTCCACACTGGTATTAGACCTTATCAATGTCAATATTGCCACAAAAGCTTTTCTCGTAACACAAATTTGAGTAAGCACCTAAGAATACATGCTGGACATAAGCCACATGTCTGTCCCATGTGCCCTCGCAGTTTTGTAGCAAAAGGGGATCTACAAAGACATGTGCTCGTACACTCTGGAATGAAGCCATATACTTGTCAAAAGTGTCCATTATCTTTTGGCAGGAAGGATAAACTTTTGAGGCATGAGATGAAACattgtgctaataataatattaaccaaAATACTTTTGATATGGTGGTGAATGTTAATCCATATAGCAATATTATGTCCCCTCCCAGTGGTGGAATAAGTGACAACATTCCAAATGAATATGACCTTCCAAGTGTACCAGACCACATTTCAGGAGATAGTTTTTTAAGCCAGCTACAGAAGACTCCATCTTCAAGTAAGCAGTTAGCTATGTCACCGTTTAAACAAAAGTCACCAATTAGTGcaaaaaacaaaccaaaaaatattaagtgtCACCAATGTCCAAAAAGATTTTCATCACTAGATGCTTACAAAACACATGTGTCTGTTGCCCATTTAGGTTTAAGACTTTTTCAGTGTAAGGTTTGCTTTAAGAAATTCCCTCGTAAAAGAGAACTTGATTGTCACTCACTCATACATTCTGAACCAAAATTTGAATGTACTCAGTGTGGTGAAAAATTTTCAAGGAAAGACAAGCTTGTTAAACATGAAAAAACTCATGAATGTCTTGTTGTTAATATGCCTTGTATTGAATGTGGtgcaatatttgaaaaaaaacctGATTTAGTTGCCCACATCAAATCTCATTTCAATGATAACTTTGacgataaaattattgaaagtaaaattaaGCAGGAGGTGCATTCAGACTTTAATACACAAGAAAATTTTGATCCTgagacataa
Protein Sequence: MDDLFIISNFNTLCRLCLCKCNFTTSIFGNVDDDGDSERSITSKIAECINLQMEPNDGLPARLCYKCLFQLNESAKFRAQCMQTESKLRQIVNQLREHDTSYSSEINYNGFDNQKVKDENYIVEDSVVMVVDPSLDYDSSEESENIEHNEPEAIGNDQIQGPNDHIQDSYLMKSVFMCQYCDQAFISEEKCKDHEQGVHDPNIPYKCVECSINFSERSLFIGHNKAVHRSDKPYQCPECDKCFGRRSDLRKHSIVHTGIRPYQCQYCHKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLVHSGMKPYTCQKCPLSFGRKDKLLRHEMKHCANNNINQNTFDMVVNVNPYSNIMSPPSGGISDNIPNEYDLPSVPDHISGDSFLSQLQKTPSSSKQLAMSPFKQKSPISAKNKPKNIKCHQCPKRFSSLDAYKTHVSVAHLGLRLFQCKVCFKKFPRKRELDCHSLIHSEPKFECTQCGEKFSRKDKLVKHEKTHECLVVNMPCIECGAIFEKKPDLVAHIKSHFNDNFDDKIIESKIKQEVHSDFNTQENFDPET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00875558;
90% Identity: iTF_00875558;
80% Identity: -