Basic Information

Insect: Leptidea juvernica
Gene Symbol: -
Assembly: GCA_949711685.1
Location: CATIXL010000001.1:19147618-19169567[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0047 0.66 11.8 1.4 2 21 131 150 130 151 0.93

2 11 0.27 37 6.3 3.3 3 23 218 239 216 239 0.91

3 11 0.016 2.2 10.1 0.3 2 20 245 263 245 265 0.90

4 11 0.00015 0.021 16.5 0.3 1 23 273 296 273 296 0.97

5 11 0.00016 0.023 16.4 2.5 1 23 314 336 314 336 0.96

6 11 9.1e-07 0.00013 23.5 5.4 1 23 343 365 343 365 0.98

7 11 2.8e-07 3.9e-05 25.1 1.7 3 23 374 394 372 394 0.96

8 11 2e-05 0.0028 19.2 3.2 1 23 400 422 400 422 0.99

9 11 7.4e-07 0.0001 23.8 1.6 2 23 429 450 428 450 0.96

10 11 9.7e-08 1.4e-05 26.5 0.8 1 23 456 478 456 478 0.99

11 11 0.0027 0.38 12.5 0.6 1 23 484 506 484 506 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0047	0.66	11.8	1.4	2	21	131	150	130	151	0.93
2	11	0.27	37	6.3	3.3	3	23	218	239	216	239	0.91
3	11	0.016	2.2	10.1	0.3	2	20	245	263	245	265	0.90
4	11	0.00015	0.021	16.5	0.3	1	23	273	296	273	296	0.97
5	11	0.00016	0.023	16.4	2.5	1	23	314	336	314	336	0.96
6	11	9.1e-07	0.00013	23.5	5.4	1	23	343	365	343	365	0.98
7	11	2.8e-07	3.9e-05	25.1	1.7	3	23	374	394	372	394	0.96
8	11	2e-05	0.0028	19.2	3.2	1	23	400	422	400	422	0.99
9	11	7.4e-07	0.0001	23.8	1.6	2	23	429	450	428	450	0.96
10	11	9.7e-08	1.4e-05	26.5	0.8	1	23	456	478	456	478	0.99
11	11	0.0027	0.38	12.5	0.6	1	23	484	506	484	506	0.98

Sequence Information

Coding Sequence: ATGGCTGAGCTATGCCGAACTTGTCTTGGCAAGGAGATAGAGCTGGTATCAATTTTTGACTCATATTCTGAAGACCTAACCATTCGCAACATCATTTGTGCCATAACTGGATTAAAGATTGAGTCTGGAGATGGCTTACCTTCAACAGTGTGCCGTATTTGTAAGCAGAAGGCGACAAATGCTTTTGACTTTAGAAGAAGTGCAATACAAGCAGATGCAAAGCTCAATGAACTTGCACCTAAGAGGATTGAAGTAAAGGTGGAAATAAATTCAGTGGAACAAGTCAAAGATGAATCTGATGATGATGTTGGAAATTCCTATCTAGATATTGATTTTGGAATAGATTTTCCACAAACGGGGGATCAAGAAACTCATGAGATGAAGTTGATAAAGTGTACGCTTTGTAAGAAGGTGTTTGCGAAGCTGGAGGACTTGGACAAACACAAATGTTCGGATGTAAGCGCTAATGCTAACGCCGATAATCAACAGGACATGTCGAGCTTCGATTCCGGCCATGTTGGTGAACATCGTCTTGCTCTTTTGTTGCAGGAGGAAGGAGCCTCATCGACAGGCACTATGTGTGAACAAGTCCCACTCGCTGACGTCATCGCACGCCTACCCGACAATGAGTGCGTGTCGGAGATATGTCTGTGCGAGAGCTGCGGGTGCGTGTGCGTGGGACAGGAGGAGCTCAACAGACACCGGGATGAGGATCACCCTGAGTTGTCGCCTCGGTGCCAGCTCTGTGATAAGgtattctCGTCGGTAAAGACGGCAGCACGACACCGCACCTCGTGCAAGAGCCGCGAGCGCAAGTTCCCGTGCGAATCTTGCGGAGCCCGTTTCGCGCACGAGATGTCGCTGAACAAGCACATACTGCGTGCACACCGCGGTCAGACCGTGCGCGTGCGCTTCGACGAGGAGCGCGTAGCGGCCGCGCACTGTTGCGATATCTGCTCTGTCAAGTTTAGCAGGAAGGATCTGCTGGCACGTCATGCGAATGTACACAGGCCGAGTGACAAGGTATTCGAGTGCGACACATGTAAGAAGAAGTTTCACAGAAGAAGCAACCTCAGGCAGCATATGCGAGTGCACGAGGGGAAAACAAGTGCCTGCCTGTGCCTGTACTGTGGCCGAGGATTCTCAAACTCCTCCAATCTGATCGTGCACATGCGCAGACACACTGGCGAGAAACCATACAAGTGCGACTTTTGTGGGAAAGGATTCCCACGGTCTTCCGATCTGCAGTGTCACAGGCGATCGCATACGGGAGAAAAGCCATGCATATGCGGAGTGTGTGGCAAAGGTTTCAGCCGCAGTAACAAGTTGTCGCGACACATGCGCGTGCACACCGGCGTGAAGCCGTACAAATGCCCGTACTGTGAAAAGGCATTCTCGCAGAGTAACGACCTGACGTTGCACGTGCGACGACACACCGGAGACAAGCCCTATGTGTGCGAGACATGCGGCGACCGCTTCATACAGGGCACAGCGCTACACAATCACAGGCGCGTACACGGCCATTATCCCGAGTCAGCTGGTTACAGCGCGCCTGTCGTCGTGCAGCAACACGTCGCCCCGGCACCTATTGAAAACTGCCAATTTCGACCAATCGTGTGCGTCGTGACACAAACAGCCCAATAG
Protein Sequence: MAELCRTCLGKEIELVSIFDSYSEDLTIRNIICAITGLKIESGDGLPSTVCRICKQKATNAFDFRRSAIQADAKLNELAPKRIEVKVEINSVEQVKDESDDDVGNSYLDIDFGIDFPQTGDQETHEMKLIKCTLCKKVFAKLEDLDKHKCSDVSANANADNQQDMSSFDSGHVGEHRLALLLQEEGASSTGTMCEQVPLADVIARLPDNECVSEICLCESCGCVCVGQEELNRHRDEDHPELSPRCQLCDKVFSSVKTAARHRTSCKSRERKFPCESCGARFAHEMSLNKHILRAHRGQTVRVRFDEERVAAAHCCDICSVKFSRKDLLARHANVHRPSDKVFECDTCKKKFHRRSNLRQHMRVHEGKTSACLCLYCGRGFSNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCICGVCGKGFSRSNKLSRHMRVHTGVKPYKCPYCEKAFSQSNDLTLHVRRHTGDKPYVCETCGDRFIQGTALHNHRRVHGHYPESAGYSAPVVVQQHVAPAPIENCQFRPIVCVVTQTAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00876419;
90% Identity: -
80% Identity: -