Ljuv024540.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptidea juvernica
Gene Symbol
-
Assembly
GCA_949711685.1
Location
CATIXL010000034.1:3568215-3588681[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 8.1e-05 0.011 17.4 0.1 3 23 127 147 126 147 0.97
2 16 7.3e-07 0.0001 23.8 1.2 1 23 153 175 153 175 0.99
3 16 4.6e-06 0.00064 21.3 2.7 1 23 181 203 181 203 0.99
4 16 1.3e-05 0.0018 19.8 4.3 1 23 218 240 218 240 0.98
5 16 4.2e-05 0.0059 18.3 3.1 1 23 255 277 255 277 0.98
6 16 2.9e-07 4.1e-05 25.0 1.5 1 23 292 314 292 314 0.99
7 16 4.3e-07 6e-05 24.5 2.2 1 23 320 342 320 342 0.99
8 16 0.12 17 7.3 1.8 1 23 349 371 349 371 0.98
9 16 4.9e-07 6.9e-05 24.3 2.3 1 23 377 399 377 399 0.99
10 16 0.034 4.8 9.1 1.8 1 23 406 428 406 428 0.98
11 16 2e-06 0.00028 22.4 1.5 1 23 434 456 434 456 0.99
12 16 0.00038 0.054 15.2 0.7 1 23 463 485 463 485 0.99
13 16 1.8e-06 0.00025 22.6 2.4 1 23 491 513 491 513 0.98
14 16 0.0016 0.23 13.3 0.3 1 20 519 538 519 541 0.93
15 16 2.2e-05 0.0031 19.1 1.3 2 23 548 569 547 569 0.97
16 16 2.4e-06 0.00034 22.1 1.3 1 23 575 598 575 598 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCCGAGCCTATGAGTTTCTACACTCACCCCCATATCAACTCGGCACCTTCGTCAATAGTCCGCTCGGAAGTCAACCATGGCATCATCAACATGAACCAGCACCACCATCAGGAGGACTCAAAGGACAGCCTTATACAACACCATCAGCAAGAGCTAATGGAACAACATCAACAACAGGACTTGCAGCCGGATGATGATGTTGATAATCTCAGCTTTAAAGGAATGGATGACGAAGGTGTTGAGATGGATATGGACGGTCAACAATGCAACcagGGAATGGGCGTCGATATGGGTGGAGTGCAGACTAAAATGGAAATTCAGAATGGGCAAGGATTGCCACGATCAAAGCCACAGGCGTGTAAAGTGTGTGGGAAGGTTCTATCATCAGCATCTTCATATTATGTCCATATGAAGCTCCATTCGGGAAACAAACCTTTTCAGTGCACGGTTTGCGACGCGGCGTTTTGTCGCAAGCCGTACCTGGAGGTACACATGCGCACGCACACTGGCGAGCGTCCATTCCAGTGTGATCTGTGCCTCAAACGATTCACGCAAAAATCCAGTCTTAACACGCACAAACGAGTTCATACTGATGAACACTTACGCGCCTTGTCGGAGAAGGAGCGGCCGTTCACGTGCGAAGTGTGTCACATGCGCTTCACGCAGAGCTCCAGTCTCAACCGGCACAAGAAACTGCACACGGAAGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACACGGAAAAATTCACACCGAGGAACACATCCAATCGCTGGTCAACAAAGTGCGCCCCTATCAATGCGACATCTGTGACAAGCGGTTTACGCAGAAGTCAAGCCTCGGCACTCATAAACGTATACACACCGGCGAGCGGCCGTATCAGTGCGACGTCTGCCTGAAGCGCTTCACGCAGAAGTCCAGCCTCAATATACACAGGCGGACGCACACAGTGCAGGGCAGGCCGTTCCAGTGCCTGTCGTGTCCCGCCGCGTTCACGTGCAAGCAATACCTGGAGATCCACAATCGCACGCACACGGGGGAGCGCCCGTACCAGTGCGACATCTGCCTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATCCACAAGCGGACGCACTCAGTTCAGGGTCGGCCATTTCAATGCCTGCAGTGTCCGGCGGCGTTTACTTGCAAGCAATACCTGGAGATTCACAATCGCACGCACACGGGGGAGCGACCTTACCAGTGCGATGTGTGCCTCAAGAGATTCGCTCAAAAGTCCACGCTTAATATACACAAACGAACGCACACAGAACAAGGTCGGCCGTACCAATGTATGGAGTGTCCGGCCGCGTTTACGTGCAAGCCGTACCTCGAGATCCACATGCGCACGCACACAGGCGAGCGCCCGTTCCAGTGCGATGTGTGTTACAAACGCTTCACACAGAAATCCACACTCAACATCCACAAACGCATCCATACCGgAGAGCGACCGTACGCTTGTGATATTTGTCAAAAAAGATTTGCAGTGAAGAGTTATGTAACTGCCCAtagATGGTCGCACGTGGCCGACAAGCCGCTGAGCTGCGAGCGGTGCTCGATGACGTTCACGTCCAAGTCGCAGTTCGCGCTCCACATTCGCACGCACGCGACCGGCCCGTGCTACGAGTGCAGCGTGTGCGGGCGAAGCTTCGTGCGAGACAGCTACCTGATACGGCATCACAACCGCGTTCATCGTGACAACCACAGTAACATGTCGGCGCAGAGTGTGGGCGCCATGAGTGTTCAGAGCGGAGGGAATGCGACCAACTATGATTCTGCCGCAGTTTGCGACTTAAGCTTCGTGCCGATGGTGAACCGCTATATGACGTCACAAGGCACGCAGGTCTCGCTGCAAGACTCGCACTCCAAGATGTCTGCCATGTCGCCGCAGTCTATCGCATCTATTTCGTCTCCGCCGCCGCCGCATACGCCCACCCCGCAGCCGCAGATGACGGGCGGCTTGCGGATCGTGGAATGA
Protein Sequence
MFEQQIKAEPMSFYTHPHINSAPSSIVRSEVNHGIINMNQHHHQEDSKDSLIQHHQQELMEQHQQQDLQPDDDVDNLSFKGMDDEGVEMDMDGQQCNQGMGVDMGGVQTKMEIQNGQGLPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHLRALSEKERPFTCEVCHMRFTQSSSLNRHKKLHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLVNKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPYQCDVCLKRFTQKSSLNIHRRTHTVQGRPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTEQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFQCDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLSCERCSMTFTSKSQFALHIRTHATGPCYECSVCGRSFVRDSYLIRHHNRVHRDNHSNMSAQSVGAMSVQSGGNATNYDSAAVCDLSFVPMVNRYMTSQGTQVSLQDSHSKMSAMSPQSIASISSPPPPHTPTPQPQMTGGLRIVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00824939;
90% Identity
iTF_00876409;
80% Identity
-