Ljuv008136.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000007.1:15975019-15975780[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.4e-07 0.00021 22.2 0.0 1 38 18 55 18 59 0.90 2 2 6.5 5.7e+03 -1.6 0.1 30 44 130 144 130 145 0.79
Sequence Information
- Coding Sequence
- ATGTCTTCGCGAAGACGAAGAGTTCTCGGGGGGAAACCCTACCGAAATTATAGTGAGGACACTTTGAAAGCTGCTATGGCAGCAGTTGACACTGGCATGACTTTGAGGGAAGcggaagaaaaatttaaaatacctcGAGCAACTTTAAATAGAAAACACCGAAGGCTACAATTAAACAAAGTCGGCCGTCCTAAAGTTTTCAGTGAAGCTCTGGAGGAAGTCTTTGTGCAATCAATCTTTACAGCTGCTGCTTGGGGATATCCACTATCAGGTTTAGACCTATCTTTACTCGTGAAATCACATCTAGATAGGCTAGGTCTAAATGAGACACGTTTCAAAGGTAACTTACCGGGACGATATTGGCTGGAAGGTTTTCTACGGCGCCATAAAAGCACTTTATCTGTAAGGCTCTCAGAAAATATTAAACGCCAAAGAGCTGGAGTTACGCAGGAGACATTAAAATCATACTTCCAAGAATTAAAAACCACCTTGGAGGATGTAGATCCGGCCGCAATAGTAAATTTTGACGAGACTAATATGTCTGATGACCCGGGACGCCAGAAAGTGTTGGTACGTCGAGGTATCAAGCATCCTCATAAAATCATTGACTCATCAAAATCAAGTACCTCCATAATGTTTGCTGGGACAGCGTCAGGTGTTCTGCTTCCACCGTACGTCGTTTATAAAGCggaacatttatataatacttggaCGGTAACCTCCAAATACAGTTTACAACCGATCTCGGAGTGGATGGTTTGA
- Protein Sequence
- MSSRRRRVLGGKPYRNYSEDTLKAAMAAVDTGMTLREAEEKFKIPRATLNRKHRRLQLNKVGRPKVFSEALEEVFVQSIFTAAAWGYPLSGLDLSLLVKSHLDRLGLNETRFKGNLPGRYWLEGFLRRHKSTLSVRLSENIKRQRAGVTQETLKSYFQELKTTLEDVDPAAIVNFDETNMSDDPGRQKVLVRRGIKHPHKIIDSSKSSTSIMFAGTASGVLLPPYVVYKAEHLYNTWTVTSKYSLQPISEWMV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01156336; iTF_00276339;
- 90% Identity
- iTF_01156336; iTF_00276339;
- 80% Identity
- -