Ljuv015563.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010000016.1:13662757-13677351[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-05 0.011 16.8 0.0 7 35 45 72 41 77 0.88 2 2 0.011 9.2 7.3 0.0 7 34 197 223 194 236 0.84
Sequence Information
- Coding Sequence
- ATGGACGGTATACCGTTGAACGTGCACGCTCGGCCACGCCTCGTGGGTCGGCGCCCTAACGCCATTGTCAACATCGAGACGGACGTGTTCCAAGAGAAATCTTACAAACAGTACTCGTCCCAACACTTGCGCGACGCACTCATTGCTGTGAAGAAAGGTTATAGTGTATACGCTGCTTCGAACAAATACGGTGTGCCACGGAAAACTCTACGGAATTGGATGGAAAAATACGACATTAAGAGTCAATTTTCTAAAGGACGCCGTGAGTTCGCAATAGCCAACGTGCAGTGCCAATATGACGGCAGTGATTCAGAAGGTGAGCACCGTGGACCGCGAGCGCCGAGTGACCACAACTACGACACCAGAGATGAACCACCAGCCTTCATCATCCAACAAGTTTCCAGGCCGCCGCAGAGTACTCCCCCGCAGGGTCCCTACGTGGAGGTGACTCCTGCCATCATGACCATCGGGCCTGGCTACGTGCCATCAGTCAACGTCATCCATGTAGGAGATAGACCTCCGACGAGTCAGTCGCAGCCAGAGTTCAGCATCAACAAGCGCATCCGGCGCAGCGAGGTCGTGCTGCGGCAGGCGGCTGAATGTGTGAGCAAGGGGCTGACCTTCCAGACCGTCTCCGAGCAGTTCAACATCCCCATATCCACAATACGTTTCTTCATGGCTCGGAAGGGAATTCTGCCGCGGCGGCGTCGCGGACGCACAACTCATCTGAACCAACAGAGCCCGAGTCCTGAGCCTCTCTTCCACATGCAGCACTTCAAACTGCCGGATATGATAGGGTTCCCTGATGAAGATCAGCCTTCTGCCAGCGATAAAGCCACAGAGTAA
- Protein Sequence
- MDGIPLNVHARPRLVGRRPNAIVNIETDVFQEKSYKQYSSQHLRDALIAVKKGYSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRREFAIANVQCQYDGSDSEGEHRGPRAPSDHNYDTRDEPPAFIIQQVSRPPQSTPPQGPYVEVTPAIMTIGPGYVPSVNVIHVGDRPPTSQSQPEFSINKRIRRSEVVLRQAAECVSKGLTFQTVSEQFNIPISTIRFFMARKGILPRRRRGRTTHLNQQSPSPEPLFHMQHFKLPDMIGFPDEDQPSASDKATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -