Ljuv035498.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010006246.1:2922-5176[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-12 4.8e-09 37.1 0.0 16 45 35 65 31 65 0.96 2 2 3.8e-18 3.3e-15 56.8 0.0 1 42 72 114 72 117 0.95
Sequence Information
- Coding Sequence
- ATGACCGACATCCTAGGGTATATGATCGCGGACGCGTCGTGCATCGTTACGTTAAGACTAGAGAGGTCGACGCATCAGTCAATCACTAACATCTGTCACTGTCAACTATCCGTGCAGCGTGCCGCCTCGCACTTCGGAATACCCACagGAACACTGTATGGGCGATGTAAACGTGAAGGTATAGAGTTATCCCGCTCTAACCCCACGCCATGGTCTGAAGATGCCATGGGGGAGGCTTTAGAAGCTGTCAGGGTTGGACAAATGTCTATTAACCAAGCGGCGATTCATTTCAACTTGCCGTACTCCTCGCTCTATGGACGGTTCAAGAGATGCAAGTATCAACCGTTGCAGGAGGTTTATCCGGTAGCTACAGAACAGACGGACGAGCAGAGTTTTACTGAGCCGAGTGCGGGGTTCTCATTCTACGACGTCCAACACGCGCTATGTGAGGGCGAAGCGCCCGTCTTCCACGAGCAGTTCTCCCATGCGCTACACTACACACATTGCGACGTCACCAGCTGA
- Protein Sequence
- MTDILGYMIADASCIVTLRLERSTHQSITNICHCQLSVQRAASHFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQPLQEVYPVATEQTDEQSFTEPSAGFSFYDVQHALCEGEAPVFHEQFSHALHYTHCDVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -