Ljuv035582.1
Basic Information
- Insect
- Leptidea juvernica
- Gene Symbol
- -
- Assembly
- GCA_949711685.1
- Location
- CATIXL010006334.1:1814-5969[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-11 3.3e-08 34.4 0.0 4 41 44 82 41 85 0.90 2 3 5.7e-13 5e-10 40.2 0.0 2 39 96 133 95 137 0.94 3 3 6e-09 5.2e-06 27.3 0.0 2 30 151 179 150 182 0.93
Sequence Information
- Coding Sequence
- ATGCCAAACAAATATGTTAGTTGCACGGTTTCAGAGGGTCAACTTGCCAGCGGTGATGATACAAGTGATTCCAGTTGTAGCACATTGGAGCACACCACTAGACCAACGGCGAAGTCCTGGACCCAGCAAGATATGGATAAGGCTCTCGACGCACTCAAAAACCGTCACATGAGTCTAACTAAGgcATCAGGTACCTACGGTATTCCATCTACGACGCTCTGGCAACGAGCACACAGATTGGGTATTCATACCCCCAAAAAGGAGGGCACTTCTAAATCGTGGAACGAAGATGACCTTAAGTGTGCCCTTGATGCATTGAGGAATGGAGCCATATCTGCCAATAAAGCTAGCAAAGCTTATGGAATACCCAGTAGCACGCTGTACAAGATAGCCCGGCGGGAAGGTATCCGCCTGTCCGCGCCGTTCAACGCTGCGCCCACCACGTGGCGCCGCGCCGACCTCGAGCGCGCTCTTCACGCCATCCGCTGCGGCGCCGCCACCGTGCAGCGTGCCGCCTCGCACTTCGGAATACCCACAGGTTTTTTAAAGTTA
- Protein Sequence
- MPNKYVSCTVSEGQLASGDDTSDSSCSTLEHTTRPTAKSWTQQDMDKALDALKNRHMSLTKASGTYGIPSTTLWQRAHRLGIHTPKKEGTSKSWNEDDLKCALDALRNGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTTWRRADLERALHAIRCGAATVQRAASHFGIPTGFLKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -