Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.39 3.5e+03 -1.3 0.9 5 10 30 35 30 36 0.88

2 7 0.00085 7.5 7.2 6.8 1 13 41 53 41 54 0.88

3 7 0.71 6.3e+03 -2.1 1.1 4 10 80 86 79 86 0.83

4 7 7.1e-11 6.3e-07 29.8 16.5 1 18 92 109 92 110 0.97

5 7 2.1 1.8e+04 -3.6 3.0 17 19 138 140 137 143 0.55

6 7 1.2 1.1e+04 -2.9 1.7 1 5 153 156 153 156 0.88

7 7 0.44 3.9e+03 -1.5 1.3 9 12 161 164 159 164 0.80

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.39	3.5e+03	-1.3	0.9	5	10	30	35	30	36	0.88
2	7	0.00085	7.5	7.2	6.8	1	13	41	53	41	54	0.88
3	7	0.71	6.3e+03	-2.1	1.1	4	10	80	86	79	86	0.83
4	7	7.1e-11	6.3e-07	29.8	16.5	1	18	92	109	92	110	0.97
5	7	2.1	1.8e+04	-3.6	3.0	17	19	138	140	137	143	0.55
6	7	1.2	1.1e+04	-2.9	1.7	1	5	153	156	153	156	0.88
7	7	0.44	3.9e+03	-1.5	1.3	9	12	161	164	159	164	0.80

Coding Sequence: ATGGATCCTTGTTTACAGTTTGACAAAACTAAATGTCTGTGTgaatcgagaaattttctgGTTCCCTGTCAATTTCATGGGGATCCACGTTGCAATTCTAAGTGTGAGTCTCTAATGTCTTGCCGTCGTCACAGATGTGCAGAGAAGTGTTGTTCAGGTAAGCCTAGTGCTGAAAGACGTAAGAAAACACCATTTACGTCAAGAGAATTGTTGGATGAATCTATGGTGGAAGCTGAACACGTTTGTTTGAAAAGTTGTAACTTGACACTAATGTGTGGTAGACATAAGTGTCAGAGAAAATGTCATCCTGGTAAATGTCCACCCTGTCTTGAGAGCGATCCTAATGACTTAGTCTGTCCATGTGGAAAAACTGTTGTAGAAGCACCTGTTAGATGTGGTACAAAGTTACCGCCATGCCCTTACTCTTGCATTAGCGTTGTTAGAGATGGATACCCCTGTGGACACACGCCTATGCCCCATTTATGTCATCCACCTGAG
Protein Sequence: MDPCLQFDKTKCLCESRNFLVPCQFHGDPRCNSKCESLMSCRRHRCAEKCCSGKPSAERRKKTPFTSRELLDESMVEAEHVCLKSCNLTLMCGRHKCQRKCHPGKCPPCLESDPNDLVCPCGKTVVEAPVRCGTKLPPCPYSCISVVRDGYPCGHTPMPHLCHPPE

Sequence clustering based on sequence similarity using MMseqs2