Lven015085.1
Basic Information
- Insect
- Lepidotrigona ventralis
- Gene Symbol
- -
- Assembly
- GCA_002806875.1
- Location
- NIPQ01092656.1:30687-36332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.21 28 6.0 0.5 2 21 120 139 119 140 0.88 2 12 0.00054 0.072 14.1 5.7 1 23 146 168 146 168 0.99 3 12 0.072 9.6 7.4 7.0 1 23 177 200 177 200 0.92 4 12 0.00061 0.081 14.0 5.3 1 23 241 264 241 264 0.97 5 12 0.92 1.2e+02 4.0 0.3 5 23 271 290 270 290 0.94 6 12 0.00054 0.072 14.1 1.5 2 23 297 318 296 318 0.96 7 12 0.16 21 6.4 3.4 2 21 346 365 345 366 0.92 8 12 0.02 2.7 9.2 0.4 1 22 473 494 473 494 0.95 9 12 5.1e-05 0.0068 17.3 1.8 2 23 502 524 501 524 0.92 10 12 0.2 26 6.1 4.2 3 20 536 553 534 557 0.88 11 12 0.12 15 6.8 0.5 2 19 575 592 574 594 0.94 12 12 0.0024 0.32 12.1 5.5 1 23 636 659 636 659 0.94
Sequence Information
- Coding Sequence
- ATGGCTCGAGCTTTTGTTTACACACGTTCTATTGATACAGTCTTTATGGACATAAAGATAAATGGTGGAACATATTCCTACAAACATGGAatgcaaataaaagaaaagcgcCAAATCTGTGATAATGTGTCATCAGTTGATACGAGTGCAAGAAATCAAAGTGATATGAGTACAACAAATCAAACAACAGATGAATCTTCTGCACGTGTTAATTGTGCAAATCAAAGATCTGTGTCACCTGAAGAGAGTGTTTCTCtaataaaaaacaattcaaatgaaaatatatcaaacaaacaaaatcaaacagtttttaacaaagaaaatggTAAACACAAACTGTCCCGAAGAAAGAAACTAACTTGTGATGTTtgttttttaacttttaaaaataaaatttcttcgaaaatgcATCAGAAAGTATATAATTCCAATGTGTTCAAGTGCCACAAATGCTCCGCAATCTTTCATAAATCATATTCTTTGACTGTTCATTTGAGGATGCATACttgcaaaaaatatacgactggatataattgtaatttttgtaatcgAAGGTTTTCCTGTAAAAAGCAACTCCAAGCTCATTTGTTCCATATACACAGtgacgaaatattttctaccgAATGTAAAACTGTGAAAATACCTGTTGTATTAAAGAAGGCGAATTGCTCGGACGATATATTAGTGAAATCTAAGAAGAAGAACCATAGTCGGAAAACATTTCAGTGTCACATATGCAAGAAATCATTCTTTTTGAAGGAGAACCGGCGCGAACACATGAAACTGTTTCACTCAATCTATATGTCGAGTATATGCAATGCACGTTACACATCCATGAAGAAGTTACTAAGTCATTACATACGTCAACACGTTGTGTTCAAACGAAAGGAATGTTGCGTGtgttacgaaaattttaactCGTCAGCCTTATTGAAGCGACACATGATCCTGCATTGTGTGAAAACCATAAGGTCCAGCAAGGACACTCTGCCAGTCGACGTTGAAATAAACTGCGTTGCGTTTAAGAAGCTAAACAAATGCAAAGGTTGTCACAAACGATTTTGGCTGAGCTCGTGTTTGCAGCAACACGAGAAAGTATGTGGCCGATTGAAATGCTTGATACGTGAAAAAGAGGATGCATCTTGCATAAAACGTGATTCTTCGTCTCCTAAAACATCGAGTAGTAACAAAAATGGATCGAGTAGTAACAAAATCGACAGAGTAGGAACACCTGATCTAGAAAGAATGCTGGCTGCCCTGGATGGGGCAGCAACTGTGGAAAATTCGGCCTCAAGTGTGCCTCTTTCAAAAAGCAATAATTCCAATTACTCTTCCTCGATCCAGAAAAGGATGCTTAACGGGATTGCATGCGTGAAGGGCTACGAAACTAATATAGCTAACATAGAGAAAACGAAGTTCCCTTGCACCATTTGTGGAATACAGTTCcagatatttcagaatttgtGCATACACGAGCGTACCTACTGTCAACCAGCCACTACCAAATGTAACCATTGCAATATAGCATTTTctactaaaaaattattgcaacaaCACGTGCTTGCTACTCACACACCATCATACAAGAAGAATTGTAAgctattttgcaaattttgtaATCAGGGATtcaataagaaaaagaagcttCGAATGCACGAAGGACACTTTCATAATAAACAGGAAGTTATACCAGCGCCAAACGCCAATCATAATCATAaactaatttgtaatatatgtcAATTGCTGTTCAAATCTCACGAACACTTTATTGAACACAACATATATTACTCTGAGAATCAAAGCTATTTATGTTCAATGTGTAACAAATTGTTTTTAGGACTATATCAGcttcatcatcatcataaGTTTAAGCATTATCCGGAGAAAGTACGAAAATTGTACTCttacaaatgtaatatttgtaacgAAGGCTTCAACTATGAATCGCACTTTCATGCACATAAGTTACATGTCCATTTAGACGATCCGTCCGCTACCAAATTGGACAAGTCGTACCAAATTATTCATGCAAGCTGA
- Protein Sequence
- MARAFVYTRSIDTVFMDIKINGGTYSYKHGMQIKEKRQICDNVSSVDTSARNQSDMSTTNQTTDESSARVNCANQRSVSPEESVSLIKNNSNENISNKQNQTVFNKENGKHKLSRRKKLTCDVCFLTFKNKISSKMHQKVYNSNVFKCHKCSAIFHKSYSLTVHLRMHTCKKYTTGYNCNFCNRRFSCKKQLQAHLFHIHSDEIFSTECKTVKIPVVLKKANCSDDILVKSKKKNHSRKTFQCHICKKSFFLKENRREHMKLFHSIYMSSICNARYTSMKKLLSHYIRQHVVFKRKECCVCYENFNSSALLKRHMILHCVKTIRSSKDTLPVDVEINCVAFKKLNKCKGCHKRFWLSSCLQQHEKVCGRLKCLIREKEDASCIKRDSSSPKTSSSNKNGSSSNKIDRVGTPDLERMLAALDGAATVENSASSVPLSKSNNSNYSSSIQKRMLNGIACVKGYETNIANIEKTKFPCTICGIQFQIFQNLCIHERTYCQPATTKCNHCNIAFSTKKLLQQHVLATHTPSYKKNCKLFCKFCNQGFNKKKKLRMHEGHFHNKQEVIPAPNANHNHKLICNICQLLFKSHEHFIEHNIYYSENQSYLCSMCNKLFLGLYQLHHHHKFKHYPEKVRKLYSYKCNICNEGFNYESHFHAHKLHVHLDDPSATKLDKSYQIIHAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01418635;
- 90% Identity
- -
- 80% Identity
- -