Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01092645.1:8204-10995[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.5e-05 0.002 19.0 1.3 1 23 316 338 316 338 0.98

2 7 5.9e-05 0.0078 17.2 1.3 1 23 344 366 344 366 0.96

3 7 7.2e-06 0.00095 20.0 3.0 1 20 372 391 372 394 0.93

4 7 0.00013 0.017 16.1 4.9 1 23 400 422 400 422 0.98

5 7 0.00017 0.023 15.7 2.7 1 23 428 450 428 450 0.99

6 7 1.8e-05 0.0024 18.8 0.2 1 23 456 478 456 478 0.96

7 7 0.0003 0.04 14.9 3.4 1 23 493 515 493 515 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.5e-05	0.002	19.0	1.3	1	23	316	338	316	338	0.98
2	7	5.9e-05	0.0078	17.2	1.3	1	23	344	366	344	366	0.96
3	7	7.2e-06	0.00095	20.0	3.0	1	20	372	391	372	394	0.93
4	7	0.00013	0.017	16.1	4.9	1	23	400	422	400	422	0.98
5	7	0.00017	0.023	15.7	2.7	1	23	428	450	428	450	0.99
6	7	1.8e-05	0.0024	18.8	0.2	1	23	456	478	456	478	0.96
7	7	0.0003	0.04	14.9	3.4	1	23	493	515	493	515	0.98

Sequence Information

Coding Sequence: atgatgCCAATGTCTAATATATTTTGCACAATATGCGACACAAAGATTGATCCTTCATcctctataaatatattttccacatCTTTCCCTCGTCAAGGGGAATTGTTAGTAAATTTCGTATCACGAGTACTTCGTGTAGCAACTTCTGAGTTACAAAATCCTTATATTTGTTTGCaatgttacaatttatttcaaatgttaGAACAAGCGCAAAAAACTGTTTTGAACATACGTTGTGAGATTTTGAAGATATACCGTGCTactgaaagaagaaagaatattaaacaaccagtaaataatagtacaaaattaaatatagagTTAGGAAAGGAAACATTGAACAATagtgatgaaaattttgaaaaagtattgaatttacaaaagaataCTCAAATAGAAGAAATAGTACAAAAACAATATGTTCAAAACAATATGGTAAATCAAAATATGAGTATTTCAAATACAGATTGTGccattaacaataaaattattataaaatcaaagaaacacttaaaaaaagaaatgattggCTATAATGAAGCAAATAGCATAAAGTCATTTGACTacaataatatctataatgatataaagaaaaatgaaattttaaaggatGATATACTTGATAATTCAGTGGCATTAACTAATGACAGCAATGTATGTAATATCAATTCACAAGAAAGTGCGCATATACCAAAAATTCATGTTGGAGAAAAAAACTGTATTTCATTATTAGATTCTGAAATTGAGTCAAAGAACTCTGCAAAAGCAGAATCCgcagataataaattacaaataggAAATATTGATCTTGAATGGAAGAGAATGgatgaaaatattacagaaataaaagaaaatactaaGGATATTACAgCATCAACAATTGATCAAATAAATATGCCTGTAAAATCAGTAAAAATACCAAAGTCTgatttaaaatcattaaaatatttttgtcctACTTGTGATAAGAAATGGAAAACATCTGCTGAATTAAAAACACATATGAAAACTCATTCATCATTAAGGCCATATATGTGTGAAAAATGTGGTCAAgcatataaacataaacatgCATTAGAAATACATGTTGGAATGCATAATGGAATAAATCCatttcaatgtaatttttgtaacaagTGCTTTACACAAAAAGGAGCACTTATGAGGCATTTACCAATGCATACTGGTGAAATGCCTTATCAATGTGAAGTGTGTGGTAAAAGATTTATTCACCATACATCTTATAATATGCACAGATTATCACATAGTGGTAAAAAATCTTATAAGTGTCAAATGTGTGATTTATCTTTGCTTTCAACATCTCATTTGAAAAGGCATATGAGAGTTCATACTGGTGAAAAGCCATATAGTTGTATAATATGTGGAAAACGTTTTGcagaacgatataatttaCTCGCTCATCAAAAAGTTCATGgttcaattgaaaataaaacaaagaaagttcaagaaatacaatttcaATGTaatcattgtaatttaatgtttgaggagaaaaaaagctggaatgatcatatgaaaTATCATTCTAATATGAACAACGAGTCTAACCTtaaacaatgtacaattcttCAAGTTGAAGAAAATCATGAACTAccaaaaaaaacaaattctgAGGATGGTATATTACAAGAAACCTGGATTCAAATGAATCGCTctaaattagatattattgACAATCAAACAAGATTTGTACTTTTACAAAGTCCTTTATCtcaaattgatgaaaattttgctgTTACTTTTAATGATCAAAAAGTATCCTTGGaaagtacaaattataatacaaatttgcaTGTAATCATAGAACCAGATATACCACTTTTAAGCAATAATCTTCCTTCAATTGATAAAATGCATATGTGA
Protein Sequence: MMPMSNIFCTICDTKIDPSSSINIFSTSFPRQGELLVNFVSRVLRVATSELQNPYICLQCYNLFQMLEQAQKTVLNIRCEILKIYRATERRKNIKQPVNNSTKLNIELGKETLNNSDENFEKVLNLQKNTQIEEIVQKQYVQNNMVNQNMSISNTDCAINNKIIIKSKKHLKKEMIGYNEANSIKSFDYNNIYNDIKKNEILKDDILDNSVALTNDSNVCNINSQESAHIPKIHVGEKNCISLLDSEIESKNSAKAESADNKLQIGNIDLEWKRMDENITEIKENTKDITASTIDQINMPVKSVKIPKSDLKSLKYFCPTCDKKWKTSAELKTHMKTHSSLRPYMCEKCGQAYKHKHALEIHVGMHNGINPFQCNFCNKCFTQKGALMRHLPMHTGEMPYQCEVCGKRFIHHTSYNMHRLSHSGKKSYKCQMCDLSLLSTSHLKRHMRVHTGEKPYSCIICGKRFAERYNLLAHQKVHGSIENKTKKVQEIQFQCNHCNLMFEEKKSWNDHMKYHSNMNNESNLKQCTILQVEENHELPKKTNSEDGILQETWIQMNRSKLDIIDNQTRFVLLQSPLSQIDENFAVTFNDQKVSLESTNYNTNLHVIIEPDIPLLSNNLPSIDKMHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00983161;
90% Identity: iTF_01420474;
80% Identity: -