Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: -
Assembly: GCA_002806875.1
Location: NIPQ01101208.1:925-5369[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 3.6 4.7e+02 2.1 6.9 2 23 241 263 240 263 0.97

2 21 2.6 3.5e+02 2.5 2.8 1 23 313 335 313 335 0.91

3 21 0.29 38 5.5 1.4 1 23 384 406 384 406 0.98

4 21 0.022 2.9 9.1 0.2 1 20 463 482 463 484 0.93

5 21 8.5 1.1e+03 0.9 3.6 1 22 496 517 496 519 0.77

6 21 0.00029 0.039 15.0 2.0 1 23 524 546 524 546 0.97

7 21 0.00024 0.032 15.2 0.3 1 23 592 614 592 614 0.97

8 21 0.0006 0.079 14.0 0.1 1 23 620 642 620 642 0.97

9 21 3.8e-06 0.0005 20.9 1.2 2 23 687 709 687 709 0.96

10 21 0.091 12 7.1 1.9 2 23 717 739 716 739 0.84

11 21 0.00097 0.13 13.3 1.5 2 23 748 770 747 770 0.95

12 21 0.00012 0.015 16.2 1.3 1 23 779 801 779 801 0.96

13 21 0.0046 0.61 11.2 0.3 1 20 850 869 850 869 0.97

14 21 0.16 21 6.3 0.3 1 23 888 910 888 910 0.96

15 21 0.00065 0.086 13.9 1.5 2 23 924 945 924 945 0.96

16 21 0.045 6 8.1 5.0 3 23 969 990 968 990 0.92

17 21 0.015 1.9 9.6 1.5 2 23 1042 1064 1041 1064 0.93

18 21 0.0024 0.32 12.1 0.6 2 23 1093 1115 1092 1115 0.92

19 21 0.029 3.9 8.7 0.1 1 23 1122 1146 1122 1146 0.95

20 21 0.059 7.8 7.7 0.9 1 23 1151 1174 1151 1174 0.97

21 21 0.043 5.7 8.1 0.7 2 23 1204 1226 1204 1226 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	3.6	4.7e+02	2.1	6.9	2	23	241	263	240	263	0.97
2	21	2.6	3.5e+02	2.5	2.8	1	23	313	335	313	335	0.91
3	21	0.29	38	5.5	1.4	1	23	384	406	384	406	0.98
4	21	0.022	2.9	9.1	0.2	1	20	463	482	463	484	0.93
5	21	8.5	1.1e+03	0.9	3.6	1	22	496	517	496	519	0.77
6	21	0.00029	0.039	15.0	2.0	1	23	524	546	524	546	0.97
7	21	0.00024	0.032	15.2	0.3	1	23	592	614	592	614	0.97
8	21	0.0006	0.079	14.0	0.1	1	23	620	642	620	642	0.97
9	21	3.8e-06	0.0005	20.9	1.2	2	23	687	709	687	709	0.96
10	21	0.091	12	7.1	1.9	2	23	717	739	716	739	0.84
11	21	0.00097	0.13	13.3	1.5	2	23	748	770	747	770	0.95
12	21	0.00012	0.015	16.2	1.3	1	23	779	801	779	801	0.96
13	21	0.0046	0.61	11.2	0.3	1	20	850	869	850	869	0.97
14	21	0.16	21	6.3	0.3	1	23	888	910	888	910	0.96
15	21	0.00065	0.086	13.9	1.5	2	23	924	945	924	945	0.96
16	21	0.045	6	8.1	5.0	3	23	969	990	968	990	0.92
17	21	0.015	1.9	9.6	1.5	2	23	1042	1064	1041	1064	0.93
18	21	0.0024	0.32	12.1	0.6	2	23	1093	1115	1092	1115	0.92
19	21	0.029	3.9	8.7	0.1	1	23	1122	1146	1122	1146	0.95
20	21	0.059	7.8	7.7	0.9	1	23	1151	1174	1151	1174	0.97
21	21	0.043	5.7	8.1	0.7	2	23	1204	1226	1204	1226	0.94

Sequence Information

Coding Sequence: ATGGACGAGGTGGTGGAGTTGCAAAATATGGAAAACGTGTGCAGGCTCTGCTTATCCACCGACGAGCCAAAATTGTCGGTGTTCGAAACGGAAGACTCTCTGTTGTCCATGGCTAGCAAAATACAAGCTTGCCTATCGATTCAGATTTCAACAACAGACAAATTATCAACACAGATATGCGCACAATgtgttaaaaatgtaaatcaatGGCATAGTTACAAAGAAACCTGTTTGAGTTCACAAGAGAAGTTGCATCAGTGGTTGGAACGGCAGCATATGCAGCAAAGTCCCATGGTTGTAACCATCAAGGATGAACCTGTTGATTTAGACTTTTATGAAGACAATATTGAGATCATTTCTGAATCTACCACTGATTCAAATTTGGAAATTACTAATCTTGAAGAGAATACGAATCACTTAGAAGATAGTGCTCGATGTCAGAAAGTAACTGATGGTGATGAAATAGTCGTAGATGAAGATCAACCAATCTTGATGAAAGACATGAATGTTTCTATAAAATCTGAACTACAGGATGATTACGATACGGATTGTACTATAGAAATAGAATCTGTTACTGGTAATGAACTTGTCGAGAATCCAAAGGAAAGGATCATGGAAGCTGATTCCACTCAGAAATCCAATGCATCTGCATCaacaaacaagaaaaaaaccaGAAGAGGTCCTCATACTCACTTTAGGGGTGCACGTGTTTTTAAACAGAAGTGTGTACATTGTCAAATTAATTTGCATTCTAAGCATTCTTATGCAAATCATATGCAAAGATTTCACGCTGACAAACAGAATGGTAGTGTCAGTAAACCGGAATTAAAAGATGAGGAAGAGCTTGTCGAAGATCTGGAAGATGAATTAATGAGTATGGAAAAGGATGCTCCATTGACACAAGtgcaacaaaatattattggtCAATTGAAGACATTTTCATGTTATTCCTGTCAACAAAGCTTCAACGATCGCAGAAGCACGCTTTTCCATATTCGCCAGCATATGCCCGACCTGAGACCGCACACGTGTATCGCGTGTTTGACAGAGTTTCCAGATCGATCAATGTACAAGCTACATTGCGGAGCATCGTTTGAATGTGCAATGAAAATCGCCCTTGTTGTACCGAAACAAGGCGAGGAAAAATACTTCACGTGCAATATGTGTTTACGTCCTATGCAGAATAGGAAACAATTGCTTAGCCATTTGTCAAAACATTCGGATAAACAGTACGAGCAACTGGTATCCCCGACACGATCTCCTCCTAAATTGAAACCAGTGACTCCTCTGCCACCTTTGAGGCAAGAATCACGAAAAAGACcgttcgaagaaaattatatattaaacataccCAGCCCTTACAAAAATGGCGATCCTGCGCATAATCATATATGTGATTTGTGTGGTATGATCTACAGATATAAGCCAAATATGTTGAGACACAGAGATCTATGTCAACGTTTATCATCGGATGTTAGAACATCCTACAGATGTGTTCACTGTGGCATGACATATctggtatttaaaaaattccattctcATATTACACAGGAgcataaaaagaaagatttcatATGTTCTACATGTGGCAGCAAATTCAAGTCTCCTAGTAATTATTTGGAACATCACAGGGGACATCGTGACAATCacgataaacaacattcccTTGATCCGAAAAGCGATTTAACGAAGCTCCCACAGAACATTTCAAATAAGGACTGGGACACATTTGAGGCTGAAGTAAATGCTAAAAAACTGTCCGACAGTAATCAGTATAGCTGTGCTCTCTGCAATTTAGAATTTACTACCAGAGCCGAATTAACAGAACACAGAAATCTACACCTGAAAGTGAAGATTTATTCTTGCGTCATCTGTCGTAGCATGTTCAGCAGCGCAGGTGCTTTGGAAATTCACATGAAGGATCATGGCATAGAAGAcccgaatgaaagaaatgcaaACAGCTCCTGCGTAGAGTATGGTAGTACGGTGGAAGAAGAATCAAAAGATTCGAACTCAATGAACATAAGTGCCACTTCAGATCCTGGTGTTAAAAAGAACGAGTGCAATAAGTGTGGGAAAATATTCTCGAATAGCGCAAATCGTAGAAGACATATAAGAAATCTTCACAACGTTACCAGAGGGCACCTCAGCTGTTCCTACTGTTGGCGAACATTCAAGAGCAAAGAAACACACGACCGACACGTTACAATCGATCATTTAAAATCCTCAAAATCCATGCTTCGATGTTCTCGATGTCCAAAGACTTTCTTCTTCCAAGCCAATCTGAATCTTCATTTTGAGACTACGCATTCCGGGAAATCATTTTCAGCTGGCCACAAATGCGATATTTGCGGTAAGACATTCATGGAAGaaacatctttgaaaatacACAGAAGCTGGCACAATCGAGCAAACTCTAGACTGAGTTTGTACTTTATGAAGAAAGAAGATCCAAAACAAGAGGAACCTTTGGATTCTAATACAACCCGGCCAGCGAGAGCGCGAAAATCTTACCCGAATTCACCTTCGACAAAACCTAATGGTAATTTCCAATGTCAAGTCTGCAGTGAAAAGTTCAATGATGTAACAGAACTTAGGACACACTTATGGGACGTACATTGTGCACGCAgcaaaaatgagaaaaatttcccTGATGGCGAATTCCATTGTGAACTTTGTATGAATGTTTTCCCGGATAAGGAAACGTTGGATGTGCATTTGCAATGGCATAAAGCTCAACCAATTCTCAACGATATAAAGTCTGATAATACGTGTGACATTTGTGGGAAATCATACAGCTCAAAGAAGATATTGTCCAGACACAAGAAACTTCACAAGTCCACAATTGCAACTGCTGCGAAGTTACAATCAGCTGGCAAAAACTTAGCTAGCAGTCAACCTTTATGCACCATTTGTCACAAGGTGTTCAACAATAATCGCTCGCTCCAGTGTCATAGACTGAATCTGCATGCTAACATATTCAACCAACAATCTCAACAGGTACAGAAAAATGCAAGAAGGGCGTCTCAAGAAGAGCCAAGAgctaaaagaataaaattagaggAAGAGGGCAAGCAAACACCTTCTGTCATGGATGCTTCGAGCGCGGGCAAAAAATCCGTCATGTGCCACGTCTGTAGGAAATTCTTCGCAAACATGAGTGTACTTTATAAGCACAAGCAATTGGTACACAAGACTCATACGAATCTGGTAAAAAATCTCACTAAATCATACCAAATGGAATGCATACCGTTGCACAGCAGTGATGGCAAAGTCTCTTGTAAcatttgttacaaaaaattcCCTGGCGTGTCGAATTTGCGTCAGCACTTTACTGTAAAACACAAGAATGCCCCTGTTAAGTATGCTTGTACTGTAGATGGGTGCAAACTCACATTTCCTACACCGATGGTCCTAAAGAACCACGAATTGTCTCACACCAGCATCATCTTCAGTTGCAACTTATGCAATAGGCATGTGTTCAGCAGGCCTGCGATGTCGAACCACATACTGACGGTACACAATATCGTCTACAACGCTGAGAGCAGCAAAAACTTCCACAGAGAACTGGATTTGGGCAAATACGTGGTAGAGGGTGCAGTAGATGCTACCTGCCCTCAATGCAAGATCAAGTATCCCAACAACAGGGCTATGAAGATTCATTACTTCAAGTATCACGAAAACCCAAACGAATAG
Protein Sequence: MDEVVELQNMENVCRLCLSTDEPKLSVFETEDSLLSMASKIQACLSIQISTTDKLSTQICAQCVKNVNQWHSYKETCLSSQEKLHQWLERQHMQQSPMVVTIKDEPVDLDFYEDNIEIISESTTDSNLEITNLEENTNHLEDSARCQKVTDGDEIVVDEDQPILMKDMNVSIKSELQDDYDTDCTIEIESVTGNELVENPKERIMEADSTQKSNASASTNKKKTRRGPHTHFRGARVFKQKCVHCQINLHSKHSYANHMQRFHADKQNGSVSKPELKDEEELVEDLEDELMSMEKDAPLTQVQQNIIGQLKTFSCYSCQQSFNDRRSTLFHIRQHMPDLRPHTCIACLTEFPDRSMYKLHCGASFECAMKIALVVPKQGEEKYFTCNMCLRPMQNRKQLLSHLSKHSDKQYEQLVSPTRSPPKLKPVTPLPPLRQESRKRPFEENYILNIPSPYKNGDPAHNHICDLCGMIYRYKPNMLRHRDLCQRLSSDVRTSYRCVHCGMTYLVFKKFHSHITQEHKKKDFICSTCGSKFKSPSNYLEHHRGHRDNHDKQHSLDPKSDLTKLPQNISNKDWDTFEAEVNAKKLSDSNQYSCALCNLEFTTRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGSTVEEESKDSNSMNISATSDPGVKKNECNKCGKIFSNSANRRRHIRNLHNVTRGHLSCSYCWRTFKSKETHDRHVTIDHLKSSKSMLRCSRCPKTFFFQANLNLHFETTHSGKSFSAGHKCDICGKTFMEETSLKIHRSWHNRANSRLSLYFMKKEDPKQEEPLDSNTTRPARARKSYPNSPSTKPNGNFQCQVCSEKFNDVTELRTHLWDVHCARSKNEKNFPDGEFHCELCMNVFPDKETLDVHLQWHKAQPILNDIKSDNTCDICGKSYSSKKILSRHKKLHKSTIATAAKLQSAGKNLASSQPLCTICHKVFNNNRSLQCHRLNLHANIFNQQSQQVQKNARRASQEEPRAKRIKLEEEGKQTPSVMDASSAGKKSVMCHVCRKFFANMSVLYKHKQLVHKTHTNLVKNLTKSYQMECIPLHSSDGKVSCNICYKKFPGVSNLRQHFTVKHKNAPVKYACTVDGCKLTFPTPMVLKNHELSHTSIIFSCNLCNRHVFSRPAMSNHILTVHNIVYNAESSKNFHRELDLGKYVVEGAVDATCPQCKIKYPNNRAMKIHYFKYHENPNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01417894;
90% Identity: iTF_01417839;
80% Identity: -