Lven001254.1
Basic Information
- Insect
- Lepidotrigona ventralis
- Gene Symbol
- -
- Assembly
- GCA_002806875.1
- Location
- NIPQ01093242.1:704-5808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.037 4.8 8.4 1.1 3 23 256 276 256 276 0.90 2 13 0.08 11 7.3 0.7 1 23 281 304 281 304 0.95 3 13 0.00042 0.055 14.5 0.2 3 20 318 335 316 336 0.94 4 13 0.0018 0.24 12.5 0.7 3 23 352 372 352 372 0.98 5 13 2.3e-07 3e-05 24.7 1.6 2 23 416 437 415 437 0.97 6 13 0.0069 0.91 10.6 0.3 1 23 442 465 442 465 0.90 7 13 0.82 1.1e+02 4.1 1.6 2 23 539 560 539 560 0.96 8 13 3.2e-05 0.0043 18.0 3.8 1 23 569 591 569 591 0.95 9 13 2.9e-06 0.00039 21.3 3.1 1 23 600 622 600 622 0.99 10 13 0.078 10 7.3 5.9 1 22 628 649 628 649 0.95 11 13 0.00039 0.051 14.6 2.9 1 23 676 698 676 698 0.99 12 13 0.18 24 6.2 0.0 1 23 763 786 763 786 0.97 13 13 1.5e-06 0.0002 22.2 4.7 1 23 791 814 791 814 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTGCCTAACAAGTGGGAGAATGCTTGTAGATTATGCTCGGAAGAGAAGAACGAAATGTTGCCGATCTTTGGCAACGAAGGTGTACAGCGTAAAGTGGCACAAAAGTTACGTGCCTGTCTGCCAGTCTTAGTGTACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGTGCTGCCAGGCTGGATGATGTTTATGAGTTTAGAGAATATTGTTTAAGCGTTTACAAGAGCATGCACTTGAAGCTGTTAGCTTATAAGAATGTTGAATctgtacaaatttatttagaagCAATGAAAAATTCCCCTGATCCTTGTCAgGCTCAACTATGGAGAGAAAAGGCTAGAGCACCGCCACCTTTAGTACCTTTGCCAGTTTCACTGCCAGTTGAAAGTCCATCAATGCCAATAGATGTTAGCCAGGAGCATCAAAATAATTGCATGGAGTCATTACCTGAATTACCATGCGAAGTAGAGATCAAAGAAATGACTACAGAACCAATATTAGAAACAAGTGTTAATGCGTACGAATCGTCGCAtgaaaataatgtagaaaatgagctgtataataaattacatataataatggaacaaaatacaaatttattaaaagacgGAAGCAATAACTTGAGGCAAGGAGTACAGGTaaaggaggaagaaaagagGACGAGTATTTTAGAACAAGTGCTAATGGGTAGTTTGACAATGAATGATAGGAAAGACTTAAATTCAAAAACAAAGCTATCCTCCAAGTGGTGGTGTACTCCTTGCAATAGTTATTACAGGACAAAGGAAAGTTTAATGAAACATATGCAATTACATTGTCCAAGAAAGTACAATTGCAGAAAATGTTCTGCTTGCTTTGAGTTAGTGGAAGACTTGGCTAAACATGAAGCTACTAATCACTTAAAAGTAACGTTAGACTTTGATAGAAGTGTTCTAGATTGTGACCAATGTGACAGACAATTTGTTAGTTGGGAAATGCTGAAGAAACATAGATTATGTGATCATTTAActcaaataaatgaaattgggACCAATACATGGTGCTCCTTATGCAATAGATTTTTCCCAAGTATGGAAAATTATCAAAGTCACATTCAGTTACATGAAATCAGTAATTATACATCAACAAAACCATTACCATTAATGAATCAACAGTCAGTAAAAGTTTTCAAAAGTGAAGAAACTTCAAAGGAAGTGAAGAGGGAACACTTTGTAGATGCTTCTAAATCACTTACTTGTCCTACTTGtggaaaaATCTGTACTCAACAAAGTGCGTTATCAAATCATATGCGCACTCATGAACCAAAAAGACATAAATGTGATATATGTGGACGATCATTTGGACTTTTTATACGTCTAGCAGCCCATAGAATAAGCGAACATAGTCAACAACCTACAATGTCGCCTGTAATGGCTAGTGTTGAACAAGAAGAAGCTTTGAATGCTGAAAGAGAAGCTAAAGAAGCAAGAGAAGCCAAAACTCGTGCATCAAAAACTAGAACATATTCAGAGATGATAGAAAGAGAAGATATTCCTAACCATGAAGAACCACCTCCAAAAAGAAATGTTCCATTAAATACCAATGCATTTAAAAATGTGGCAAGATGTGGTATCTGTTTACAATGGTTTAGTGATCACACTACGATGTTAACGCATTTACAGACACATTCGGATAATTAcacttgtaaaaatttcacctgccatatatgtaaaaaatcttttaaagaAAAGTGGCAATTATTTAGACACGAggTATCTCATAAACCAACTGACTCTGCAACAATGTACACATGCACAGTATGCAACAAATCGTTCGtagataaaaatacatataaaatgcATCAGAAAACGCACATTGTTGACAAAACATATCACTGTCCTAAGTgtaataagattttttttaaagaagtaTGTTTGCTAACTCATCAGTGCACAGAAACTGTGTTCGGTAAAAAAGgagtttctttgaaaaaatctTCGCAAAAGTCTGCCTCGTTGAGTAATAGCAAAAGTTATAAATGTACCAAATGTAATGCGTCTTTCAATAGTTTTCAGTCGAAAAATTCTCATATGAGAGTGCATATGGAAAGTTCACATACAACAgTACGAAAGCAAGATTTAAAGGATGAGtcagaagaagagaaaactaTGCCGAAATTAATTCCTGAGACATCATTGGAGTATTCGGTTTCTACTATCGAACcgaagatagaaataaatgaagaaagtaCACCACCTCCTGTTAAACGAACTTTAATCAGGACAACCGGCGGGTATCGCTGTGGAGTATGTCAATCTCCATTTATTTTACGAGAATTAGCTGTTGCACATTTAAGATCTGCACATCCTTTGATGCCATATCAATGCCCTTACTGTAAAAAAAGGTTCACCACGCAATATACATTCACGCATCATATTAAAGCAGATCATCCTGACGAGCATGAGAATTGA
- Protein Sequence
- MAVPNKWENACRLCSEEKNEMLPIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKSMHLKLLAYKNVESVQIYLEAMKNSPDPCQAQLWREKARAPPPLVPLPVSLPVESPSMPIDVSQEHQNNCMESLPELPCEVEIKEMTTEPILETSVNAYESSHENNVENELYNKLHIIMEQNTNLLKDGSNNLRQGVQVKEEEKRTSILEQVLMGSLTMNDRKDLNSKTKLSSKWWCTPCNSYYRTKESLMKHMQLHCPRKYNCRKCSACFELVEDLAKHEATNHLKVTLDFDRSVLDCDQCDRQFVSWEMLKKHRLCDHLTQINEIGTNTWCSLCNRFFPSMENYQSHIQLHEISNYTSTKPLPLMNQQSVKVFKSEETSKEVKREHFVDASKSLTCPTCGKICTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRISEHSQQPTMSPVMASVEQEEALNAEREAKEAREAKTRASKTRTYSEMIEREDIPNHEEPPPKRNVPLNTNAFKNVARCGICLQWFSDHTTMLTHLQTHSDNYTCKNFTCHICKKSFKEKWQLFRHEVSHKPTDSATMYTCTVCNKSFVDKNTYKMHQKTHIVDKTYHCPKCNKIFFKEVCLLTHQCTETVFGKKGVSLKKSSQKSASLSNSKSYKCTKCNASFNSFQSKNSHMRVHMESSHTTVRKQDLKDESEEEKTMPKLIPETSLEYSVSTIEPKIEINEESTPPPVKRTLIRTTGGYRCGVCQSPFILRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKADHPDEHEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01123225;
- 90% Identity
- iTF_00684328;
- 80% Identity
- -