Lven015767.1
Basic Information
- Insect
- Lepidotrigona ventralis
- Gene Symbol
- -
- Assembly
- GCA_002806875.1
- Location
- NIPQ01091231.1:6854-9625[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0016 0.21 12.6 0.0 2 20 147 165 146 166 0.94 2 13 0.35 47 5.3 4.3 1 23 174 197 174 197 0.93 3 13 2.9e-06 0.00039 21.3 0.9 1 23 203 225 203 225 0.98 4 13 4.8e-05 0.0063 17.4 1.9 1 23 374 396 374 396 0.97 5 13 0.003 0.4 11.8 0.3 2 21 406 425 405 426 0.93 6 13 0.00027 0.036 15.0 2.6 1 20 448 467 448 470 0.92 7 13 0.013 1.7 9.8 0.7 1 23 475 498 475 498 0.95 8 13 1.2e-06 0.00015 22.5 0.3 1 23 504 526 504 526 0.98 9 13 0.0019 0.25 12.4 6.3 1 23 533 555 533 555 0.98 10 13 0.00032 0.043 14.8 0.4 3 23 563 583 561 583 0.97 11 13 0.00037 0.049 14.6 0.2 1 23 589 612 589 612 0.96 12 13 0.19 25 6.1 0.1 1 23 626 648 626 648 0.94 13 13 0.0012 0.16 13.1 0.0 2 23 901 922 900 922 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCTCACGAGAATGAACAATATGTTACATTTCCCCTCTCAGGAGTACATGATGGTATacaagataatattatatctcatGAAGAGATATGTGAACCTGTTGACGAATGTGTTTTACAAGAAGGACTCACTGAGGTATCTGTTACAGATGTTAATTCTAGTATTACAGAAGCACAAGTTGCAGTTGAGATTTTAGCTGAACATTCCGATGAGGAAGATGAAAATCGTGTAGTATatcctatatatattaaacaagaGGAACAACAGCAATATACATCTGGAGATGACGAATCGATGGCTGTGGAAGCCCTGCGACAACTTGGGGGCATGTATCCTTGTTTTGAAGATAAAAAAGTATCTTGTCCGCATTGTGCAAACCTTTTCACACAAAATGAGATTACGAAACATCATACTACCTGTTctgctaataaattatcatgTGTTACTTGTGGAGAAAGAttcgaaagaaagatagaTTTAAACAACCACATAGTTTGTCATCAAGTAGATCGCCCACATGCTTGCAGAACTTGTGGCAACttatttcgttcaaaaaataatttaaggtGCCATATGTTGCAAGTACATCAAGTAGAAAGACCTCACAAGTGCACCATATGTGGAGCAGATTTTCAGAGGCCTTCTAGTTTATCCaatcatatgaaaattcatacatATGTCGCTGGACGTGCCATTATGCAGTCACAGGGTAATAATGTATCACAATCAGAAACATTCAGAAAATGGCCTGAAAATATGACAGAATCTCAAAACAATCAAGTGCCATCTTCATCTGTTCAAACAGTTCAAAGTTATGAGACTGTTCAATGGACAGTACCATCTTATAACTTTCAAAGTGAACAGACAGCAGTTAATACAATATCCAACCCTGAAGAAAAAATAGATACTTTACATGAATTTACTGTAATGCCAAATGGAGAAGTGACACAATTTGAATATAcgcaacaaaataatataaatactcaAGTCAATCAACaatacaatctttcattaaacTCGTTTAATAATGCTGATACAATGGTGAAAGTTGAAACTTTACCGTATAATGAAGatagaaagaattatatagaCGTTGAAACAAATGATACAAAACAGCATACTTGCAGACATTGTGGAATTAGTTTTTCTCGTGCAACGGCACTAGTGTCCCATGAAAAAATTCATGCATCTAAAAATTGGAACATGCCAATCGAATGTGAATATTGTGACAAACAGTTTCAAGATGGCAATCATTTAGCAACACATCAAACAACTTGTGCAAAGAGACTGATGCAAAGTAATGTGGAACAAggtatatctaataataagtGGGGTAAACATGCATGTTCTGAATGTGGTAAGAAATTTACAACCAAACAAAAAATGTTTAGACATCAGTGGATTCATAGAAAGAAAACACATTCTTGTGAAGTATGTGGATCccaatttgaaaaacaaaatcaaTTGGATGAACATAGATTATCAGCACATCCTGGTGACTCTCCATTTACTTGTACAGAATGTGGTAAAAGTTTTGTATCACGTCAAGGGCTCTGGGAACATGGTAGAACACATGCTGGGAGCCCTGCgcattttcattgtgatacatGTTCCAAAACATTTTCATCGAGACAAGGATACTTAATACACCATAGGACTCATACTGGGGAAAGACCATATGGTTGCAAGTTTTGTTGGAAAGCATTTAGAGACGGTGGGACATTAAGAAAACATGAACGTATTCACACAGGAGAAAGACCTCATGTTTGTCCTTTATGTTCAAGAGCATTTAATCAAAAAGTTGTTTTAAGAGAACATGTTCGATGGGTTCATGCAGCAGGAAAAAACGAAACTGAAGTAACTGGACCTCCTTTCTCATGTCCTATATGTGGTGCTTTAAATCAAGATCGGGATGAACTATGTGCGCATATTGTTAAACATTCAGACCAAATGATTGCAGAAGCAAAAGCTAAAACAAACAATAATGCTCCAAAAACCAAATCAGTTAAGAAAAAATCAAAAGCCTCTACAAGTACAAGTTTACAAGAAAAACAAGGCACTGGAAGTCGTATAATTACTAAATCAGAGGAAAATGAAGCACTTTTATCTATTACAGAAACAGATAAATCAGATGACCAACAAATTTTAAgtgataaacaaaataatacttttcttGTTGTTACTACAGAAAAacgtaatgaaaattatatttcaatatctgaACTTAAATCTGAGAATGTACAATTATTAGTTGATGAGAAACATGAAGATGAAGATATGCATATTTCACAAACTAATCATAACCATAGAGAATCTTTAAATACAAGTCATATAGTTTCTACGGAGCAAGAAAGAAGTGCACTTCACACAAGCAGTCATAATGAAATAACTACAATGCATTTAATACAAACTTCAAAGCAAGCAAAtactttacatttaatatcaaaaCAAAATGAATCATTACCCGTTCTAACATTACCAAATTCTCAAAGCCATGAAAATTTTCCCAGTCAAATTGCACAAATAAGTAATAATGACTTACCTATGAATATGGTAACTCACCATTCAACTAGACAAAGTCAAGATATCAAAACTGAAGTTGTAGAAGAATCATTAATACAAGAAGGAGGATCGCAAACGGCTGTAATACAGGTTGTACAATATCATCCACAAGACAGTGATGATGGAGAGGAATTAGTCTGTGGTATTTGTGGAGAAGATTTTAATgacaaaaatgtattaatgGAACATGTTAAAATtcacatataa
- Protein Sequence
- MEAHENEQYVTFPLSGVHDGIQDNIISHEEICEPVDECVLQEGLTEVSVTDVNSSITEAQVAVEILAEHSDEEDENRVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPHCANLFTQNEITKHHTTCSANKLSCVTCGERFERKIDLNNHIVCHQVDRPHACRTCGNLFRSKNNLRCHMLQVHQVERPHKCTICGADFQRPSSLSNHMKIHTYVAGRAIMQSQGNNVSQSETFRKWPENMTESQNNQVPSSSVQTVQSYETVQWTVPSYNFQSEQTAVNTISNPEEKIDTLHEFTVMPNGEVTQFEYTQQNNINTQVNQQYNLSLNSFNNADTMVKVETLPYNEDRKNYIDVETNDTKQHTCRHCGISFSRATALVSHEKIHASKNWNMPIECEYCDKQFQDGNHLATHQTTCAKRLMQSNVEQGISNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNQLDEHRLSAHPGDSPFTCTECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFSCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNAPKTKSVKKKSKASTSTSLQEKQGTGSRIITKSEENEALLSITETDKSDDQQILSDKQNNTFLVVTTEKRNENYISISELKSENVQLLVDEKHEDEDMHISQTNHNHRESLNTSHIVSTEQERSALHTSSHNEITTMHLIQTSKQANTLHLISKQNESLPVLTLPNSQSHENFPSQIAQISNNDLPMNMVTHHSTRQSQDIKTEVVEESLIQEGGSQTAVIQVVQYHPQDSDDGEELVCGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- iTF_00217900;
- 80% Identity
- -