Basic Information

Insect: Lepidotrigona ventralis
Gene Symbol: Trl
Assembly: GCA_002806875.1
Location: NIPQ01090101.1:295-16352[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-07 1.8e-05 25.5 2.0 1 23 645 667 645 667 0.98

2 8 1.4e-05 0.0019 19.1 3.0 1 23 673 695 673 695 0.98

3 8 1.6e-06 0.00021 22.1 0.3 2 23 704 725 704 725 0.98

4 8 5.3e-05 0.007 17.3 0.1 3 23 733 753 731 753 0.97

5 8 1.7e-07 2.2e-05 25.2 3.0 1 23 759 781 759 781 0.98

6 8 2.9e-06 0.00038 21.3 0.7 1 23 787 809 787 809 0.98

7 8 6.1e-05 0.0081 17.1 7.5 1 23 815 837 815 837 0.98

8 8 0.00068 0.09 13.8 1.0 1 21 843 863 843 864 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-07	1.8e-05	25.5	2.0	1	23	645	667	645	667	0.98
2	8	1.4e-05	0.0019	19.1	3.0	1	23	673	695	673	695	0.98
3	8	1.6e-06	0.00021	22.1	0.3	2	23	704	725	704	725	0.98
4	8	5.3e-05	0.007	17.3	0.1	3	23	733	753	731	753	0.97
5	8	1.7e-07	2.2e-05	25.2	3.0	1	23	759	781	759	781	0.98
6	8	2.9e-06	0.00038	21.3	0.7	1	23	787	809	787	809	0.98
7	8	6.1e-05	0.0081	17.1	7.5	1	23	815	837	815	837	0.98
8	8	0.00068	0.09	13.8	1.0	1	21	843	863	843	864	0.94

Sequence Information

Coding Sequence: ATGATGGGAGAGGTGATCAGAGTTTCTGGGAGAGCGCCGGATGTCGGCGAGTTCCTCAAGGAGGCGATGCTGTCCCAAAGATTCGCTGACGTAGCTCTCTGTTGTCCTGGCGGACAAAGGTTCCTGGCGCATCGTTTGGTTCTCTCTGCGGCCAGCCCTTATCTACAGGAAGTATTGTTGGCGCATAGTAGAACGTCGACGCATTGCGAGCCGATCACGGTGATCCTGGCCGGAGTGGAAGCACCAGAATTGGCGGCGATCCTCGGCTTCGTGTACACAGGAAGCGCGACGGTTCCTCGTCCTCGTCTGGACGCGTTCCTGCATGCCGCCGAGTCTCTGCACATCAGGCTTCCGCCGGTGCCTGTCGTGATGACTTGCACGCAGCCCGACTGCAAGCAGGAAGACATCAAGGACGTGAAGATCAGCCCGAAGTACCTGCAGTGCGATCAGTATCCGTGCTGCGACCGCTGGTACTATCCACGTAGGAATCAAGATGGAGATGCCGCGAGCAAAGAGGAACCCTATCCGGCGATCGAGTCCTTGGCAACCGCGAGAGAAATCAGGCCGCTTCCTGAATCGATGAACTTTACCGGGCCGAGATACGGACCGGGCAGATATTGCTCTACAACCTGGCCCGTTCCTGCTTTCGCGAGCGCCGCACAAGAAAAGATGGCGCACAGCAGCGTGGATCGGCGTATTGATAAGGACCGGATAAGTCAAACGGACGTCAGACGGTATCATCCGATCTCCGTAATGCCTAGAATCGATAGCATTAGCGGCGTAGCGAGTGGACACGCGGAAAATTCGTTCGCTGGCTGCGACCCCACGTTGGAGACGACTTCCTGCCAGCGGGAATACTGCTTCACCAGCAGCCTGTACGACCTTTGTAACAGGCAACTGGATCCACTCGAGGCAAGAATGACGGAGGGCCAGAATCGTTTCCAAGCTACGAACGAAGAGGATACTTTAAGGAAGGATTTATCTGCCTGTGATGGCTGTTCCAATCAGCAGATTCCCGGTGGACGTCTGAGTGTGATTCATCCTCGAGTCGGCGCCTGTCAGGATAAAACCGTGGCGGCTTTACAGTTGCTGGAACGTGGCGGATCGTGCGAGAAGTCGGACCTTGGCGAGGATTTGACTTGCCGTGGAAGCTGTTTCGTTTGGAAATCACCGAGAAGACAGGTGGCTAACAGAGTCACAGCCTCGCCGTGGAAGCAGACCATCAGGCCCTATCATTTGCCCAAGTTACAGCCGATAGTGCTTCAGCCTCACGTCGACGATGCTAGAGCCGGGGAAAGTCTACGCGCGCCGGAAGCCACGCGACTTCCTGCGATCTCCACCAGCCCTAATCGACAATGCTCCAAAAACGCCGCGCCTGCGGACCGTCACTACGACGTCGAAGTTCCTACTATTCACGAAGTTACATACAATAACGATAAGAAATTGCTGGAGCCGAGTACCACGTTAGTGCCGAGGCCTCGAGAGTTTTATTCGCCTCAAGTTCTATCGTCGTCGACGATCGCGCAAATCTCGCCAGCGTTGTCGTCGAGCAACGACGTTGTCAGAAACAACGAGGTCGCTGCACTGTCTGAGAACAACGTGATATCCACGACAACGAAGTCGTTGCCAATTGTTACAGAGACCAGTCAGTCGAATGTGAATCGAAAGGATGGCTATCTCGGGCAAACGTTGCCACAGTCACCGCAAAAGCTGGAGATTTCCCATCCTGTTAGCAGACTGTGCGACACGATCGAGTCGATCGTTGGTAAAACCGATCATCGTCCCGCCAGCGCGGAAGCCGAGAAGCCGGAGAACGAGGCGAGGATCGACGATAGACTGGCTGAGAGAGTCATTATCAACAgtgataacaataataacgacGCCGCGGTCAGTCAGGATGGTGCACAACGCGGCAAAACAGCGCCGGAGAATCATAGGTGCGATCAGTGTGGCAAGACTTTCGTTACCAAAGCCTCCCTGAAGGTGCACGTCAGAACACACTCAGGGGAGAAGCCATTTCGTTGCACCGACTGCGGCAAGCAATTCTCGCAGTTGCGAAATTACAAGTACCACCGTAGTGTGCACGAGGGCACGAGGGAATTCGCGGCCACCTGTCCAGAATGCGGCAAGTACTTCAACGACCGTGGCTATCTGAGCTCGCATATGAAGATCCACCGTAACCGGAAGGAGTACGGCTGCGCGGAATGCGGCAAGAGTTTCAATCAACGGGTCGCCTACAACATGCACGTTCGAATCCACACGGGTGTGAAGCCGCACCAGTGCGAACAGTGTGGAAAAGCGTTTTCCAGGAAGATGCTGTTGAAACAGCATCTTAGAACCCATTCGGGGGAACGGCCGTATCAGTGCCAGGTCTGCCAGAAAGCTTTCGCCGACAGATCGAACATGACGTTGCACACGAGATTACATTCCGGTTTAAAGCCATACCAGTGCACGCTCTGTTCGAAGGCGTTCACGAAGAAGCATCATCTGAAGACTCATTTGAATTACCACACCGGCACCAAGCCCTACTCATGCCCGAATTGCGCATTGAGATTCTCTCAGAGCAGCAACATGAGAACGCATTTCAAGAAGTGTACTGTTAATAATCCGTCGGAAGGCAAGGAATCGCAGCCACACGCCACCGTCGATCATTCGCCGAACACCGTGCAAGCGAGAACGATCTCGAGAACACCTACGGACACGTTAACGCCACCGAACTCTGACCAGGAATTAAGCATCCTGACGCCGATTTCGAAGAGCAACGGGATAGAAGGGAACGGAATGGGGACCTAG
Protein Sequence: MMGEVIRVSGRAPDVGEFLKEAMLSQRFADVALCCPGGQRFLAHRLVLSAASPYLQEVLLAHSRTSTHCEPITVILAGVEAPELAAILGFVYTGSATVPRPRLDAFLHAAESLHIRLPPVPVVMTCTQPDCKQEDIKDVKISPKYLQCDQYPCCDRWYYPRRNQDGDAASKEEPYPAIESLATAREIRPLPESMNFTGPRYGPGRYCSTTWPVPAFASAAQEKMAHSSVDRRIDKDRISQTDVRRYHPISVMPRIDSISGVASGHAENSFAGCDPTLETTSCQREYCFTSSLYDLCNRQLDPLEARMTEGQNRFQATNEEDTLRKDLSACDGCSNQQIPGGRLSVIHPRVGACQDKTVAALQLLERGGSCEKSDLGEDLTCRGSCFVWKSPRRQVANRVTASPWKQTIRPYHLPKLQPIVLQPHVDDARAGESLRAPEATRLPAISTSPNRQCSKNAAPADRHYDVEVPTIHEVTYNNDKKLLEPSTTLVPRPREFYSPQVLSSSTIAQISPALSSSNDVVRNNEVAALSENNVISTTTKSLPIVTETSQSNVNRKDGYLGQTLPQSPQKLEISHPVSRLCDTIESIVGKTDHRPASAEAEKPENEARIDDRLAERVIINSDNNNNDAAVSQDGAQRGKTAPENHRCDQCGKTFVTKASLKVHVRTHSGEKPFRCTDCGKQFSQLRNYKYHRSVHEGTREFAATCPECGKYFNDRGYLSSHMKIHRNRKEYGCAECGKSFNQRVAYNMHVRIHTGVKPHQCEQCGKAFSRKMLLKQHLRTHSGERPYQCQVCQKAFADRSNMTLHTRLHSGLKPYQCTLCSKAFTKKHHLKTHLNYHTGTKPYSCPNCALRFSQSSNMRTHFKKCTVNNPSEGKESQPHATVDHSPNTVQARTISRTPTDTLTPPNSDQELSILTPISKSNGIEGNGMGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230793;
90% Identity: iTF_00873903;
80% Identity: iTF_00873903;