Lven000157.1
Basic Information
- Insect
- Lepidotrigona ventralis
- Gene Symbol
- -
- Assembly
- GCA_002806875.1
- Location
- NIPQ01091856.1:495-4685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.4 8.5e+02 1.3 0.2 1 20 365 384 365 388 0.77 2 10 0.0081 1.1 10.4 3.2 1 23 395 417 395 417 0.97 3 10 0.00096 0.13 13.3 3.1 1 20 423 442 423 445 0.96 4 10 1.5e-05 0.002 19.0 1.7 1 23 451 473 451 473 0.98 5 10 2.3e-05 0.003 18.5 2.6 1 23 479 501 479 501 0.98 6 10 2.9e-06 0.00038 21.3 0.7 1 23 512 534 512 534 0.98 7 10 8.7e-08 1.1e-05 26.1 0.4 1 23 540 562 540 562 0.99 8 10 6.7e-06 0.00088 20.1 0.6 1 23 568 590 568 590 0.95 9 10 8.8e-06 0.0012 19.8 0.1 1 23 596 618 596 618 0.93 10 10 1.6e-05 0.0021 18.9 0.2 3 23 626 646 624 646 0.98
Sequence Information
- Coding Sequence
- ATGAGTTGGGAAATCAGCTGTGCTGATATGTGTCGAGCTTGTATGAAAGTTGACGGTGTTCTTCTTCCTATGTATGATGACGGCACGATTAGCCAAAAAAATTTGCCCGATAAGCTCGCAGAACTTGCATCGATACAGattGACAGGTTTGATGGATTACCAAATATGCTTTGTGCAAAGTGTGCTTATCGCACAGATGCATTTTACAGCTTCAAGCTGCAAGTCCAAGCTACTGAAAAGAAACTTcggaaaatgtttgaaaccCAAATCCGTTATAACATAAAGGAGGAGCCAATGGGCAATGACTTTGAACAGGCTGGCTCAGAACAATCGGACGAATTGTTAGAAATGAAACTAGTAGGTAACAAAGAAGATATTAGGCCTACCAATGGTACAGAGAATTCCGAAGAATTTTTATCTGAGCGAATCAATGTAAATGACAAAGAAGAGCAATCTCTAGAGCTCGATGTATCCGAATTTGTAGAAGAGAACGGCGAATTTAATAAGGCTGGCATATCCGAGTTGAaaggtattattatttcaaagttaTCAGGAGCGGAGCTCAATCAAGATAAACGACTGAAAGGCGAGATACCTGACGAGATctcaaaaattttggaatCCCAGCAGTTAGattatacaataatgtatataCCAGAGGATGTTTCTTTGGAACATGTGGAGGAGCATGTCAATACCGACAGTACATTTTCTTGCGACGCTGTGGTTAAATTAGAGagcaacaaaaaaattgccgAAGCTGATTGCAACGGAGAACTTTTACACGAGACGGTGGACAAcgaggaatttttaaatgtgtGCAATGAGAAAGCTGCAGAAACGAGGGAGGAGGATAACAAAACAAGCAGCGACGAGGCAGTATGGAAATCGACAATTCCAAAAGAAAAGTCAAAGGAAAGGGTAAATGGGAGAAACACGCAAAAAGTTTCGTCGAGATCCAGTCAACAGCTAGAAGAAAGCGACGATTCCGATTCCGATTATTTCGTTGATCCAAAAGATAACATACTAGGTAGCTTGAACGATACAATAACAAGAATAAAGGAGATAAAACTCGAAGACGACGTGATACAGTATCAGTGTACTCTATGCTTgcaaaattatgataaattaactGGTGTCTTGTTGCATACCATAGACAATCACGTACCGAGTAGCGGTCCGTTCTTTTGCGTGGTATGCGAGAAAGACTGCGAGAGTCACAGAGAATTGCGTGCGCACGTTAAGACGCATACAGGCCAGTTCCCTTATTCTTGTTTCATATGCAACAAAGCGTACGCGATGAAGAGGTACCTAAAGAGACACATGGTATGCCACACAGATTTTCCTAGGCATCGGTGTCCGAAATGCGGTCTCAGATTCAAGATTAAGTCAGAGCTAGAAACTCACGTTACAACGCATATACGCGGTGCGCCTTATGTCTGTAGTCAATGTCCACGATTATTCAATCACAAAGGTAATTATAAGCGGCACTTGATTACTCATTTGGATCCGCAGGGTCTTCATTTACCCAAGTATCCCTGCAAAGTTTGCGGGAAGAGATTTCTGAACAATCGCACTTTGGAAACACATATGCGCGTCCACACCGGCGAGAAACCGTTCAAATGCGAAATATGTGAGCGATCGTTCTCGCAACAAGGGAATTTGCTGAACCATGTAAGAATTCACTCGAATCCGCGTTGTTACACGTGCGAGGTTTGCGGGAAACGATTCAACCAAAGAGCTACTTTGAGAGATCATAGTCTCTTACATACTGGGGAAAAGCCATATGTTTGTAATGTTTGCGGAATAGCGTTTACATTTAGCGCCGCGTTGAGACGTCACATGTGGACTCACACCGGTGGAAAACCATTTGGATGTGAAATCTGTAGTGCTCGTTTTGTTGGCAAATATGATTTGCGGCGACACATGAGGATACACACAGATAGACCAAagacgaaacgaagaaaaaacgTGATTAAGTCGAACAATGAACaggaagaaatgaaagaagaaaatagagagGAGAATGTTACAGTTTCAGAGCACCCTGGCACAGAGACCGTTTTGATAGAACAGGTTTTGTTAACGCAGAACGTAACACAAGTTGCACAACAAGAATCTGAGAAGGAAAATGTTGATGCTCTTTTTAATCTTATACAATATGGCTAA
- Protein Sequence
- MSWEISCADMCRACMKVDGVLLPMYDDGTISQKNLPDKLAELASIQIDRFDGLPNMLCAKCAYRTDAFYSFKLQVQATEKKLRKMFETQIRYNIKEEPMGNDFEQAGSEQSDELLEMKLVGNKEDIRPTNGTENSEEFLSERINVNDKEEQSLELDVSEFVEENGEFNKAGISELKGIIISKLSGAELNQDKRLKGEIPDEISKILESQQLDYTIMYIPEDVSLEHVEEHVNTDSTFSCDAVVKLESNKKIAEADCNGELLHETVDNEEFLNVCNEKAAETREEDNKTSSDEAVWKSTIPKEKSKERVNGRNTQKVSSRSSQQLEESDDSDSDYFVDPKDNILGSLNDTITRIKEIKLEDDVIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCESHRELRAHVKTHTGQFPYSCFICNKAYAMKRYLKRHMVCHTDFPRHRCPKCGLRFKIKSELETHVTTHIRGAPYVCSQCPRLFNHKGNYKRHLITHLDPQGLHLPKYPCKVCGKRFLNNRTLETHMRVHTGEKPFKCEICERSFSQQGNLLNHVRIHSNPRCYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICSARFVGKYDLRRHMRIHTDRPKTKRRKNVIKSNNEQEEMKEENREENVTVSEHPGTETVLIEQVLLTQNVTQVAQQESEKENVDALFNLIQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118167;
- 90% Identity
- iTF_01417866;
- 80% Identity
- -