Basic Information

Insect: Leistus spinibarbis
Gene Symbol: ci
Assembly: GCA_933228875.1
Location: CAKOGB010000038.1:155242-169183[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0024 0.2 12.6 0.6 3 23 315 338 313 338 0.94

2 5 0.16 13 6.8 0.1 3 23 348 373 346 373 0.79

3 5 0.00019 0.016 16.0 2.9 1 23 379 403 379 403 0.98

4 5 0.0015 0.12 13.3 0.2 1 23 409 434 409 434 0.97

5 5 8.1e-06 0.00068 20.4 0.3 1 23 440 465 440 465 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0024	0.2	12.6	0.6	3	23	315	338	313	338	0.94
2	5	0.16	13	6.8	0.1	3	23	348	373	346	373	0.79
3	5	0.00019	0.016	16.0	2.9	1	23	379	403	379	403	0.98
4	5	0.0015	0.12	13.3	0.2	1	23	409	434	409	434	0.97
5	5	8.1e-06	0.00068	20.4	0.3	1	23	440	465	440	465	0.97

Sequence Information

Coding Sequence: ATGAATTTGATTGATTGCGAACTTGCATATATTTCAAGCCGTCATCCGTTTATCCAAGCGCGTCGGTGTATAACAAAAATAACAACAGGCGGCGGAAGTGGACTGACTAGCGGTAGTGCTGGAGGCGGCGGACCCGGGGGCGGTGAGCTCGGGGGCGGCACGCGCTTGCACCCCGCCCTGCACCGGCTCCCGCCCCACTACATGGACCACCTGACGGCCGCCGCGTACACGCTGCACAGCTCGGCGGCCATCCATGCGGCCGGTTTGGGTTTGAGTCCCGAGTACCTGAGTGCCAGGGGTTTATCCGTATCTGATTTGCACCCAGCATCCACACTGGCCAGCACAGAGTTCCCCTTCAGCCTTGACGGATCCCGTCTAAACAGCCCGCGGCCAGGCGGCGGCGGCGGCTCCGTCCGAGCATCCCGCAAACGCGCCCTCAGCTCATCCCCGTATTCGGACAGTTTCGACATCAACAGCATGATCCGTTTCTCACCCAATTCCCTCGCCTCCATCGTAAACGGCAGCCGAAGTAGCAGCGCAAGCGGCTCCTACGGTCATCTATCCGCCGGAGCATTAAGTCCCGCACTCGGCATGCACCCTGGAGTCCATTTACAACAATTACAAGCCCACCTTTTAAGAAGTGCCACTGGTCTTCTTCCTCTTCCACCTCCACCTCCTCAACCACAACCACCACCTGTATATTCACTCGCACATCACCCACTTCATCCACATTCTGTTTCGTCGGTTTTGAATCATAAACCGGATAAGTTAGACTTGGGAGAAGAAGTTAGAAGGCCTGCCAGAGTGAAAAAGGAGCCACCTCAGCAACAGAACCAGTGCGGGGGAGTGTCCTCCACGCATCCTGGCGGTGGAGAAACAGCTGGGGCGGCGGATGGTGGAGGGGATTTGAAGGATGAGCCGGGGGACTTTATCGAGACGAATTGCCATTGGCGGGAGTGTAGCACGGAGTTTCCTACGCAGGATGATTTGGTCAAACATATCAATAATGACCATATTCATGCGAATAAAAAATCTTTCGTGTGTCGATGGGAGGGTTGTTCGCGGGCCGAGAAACCGTTCAAAGCCCAATACATGCTGGTCGTTCATATGCGGCGGCATACGGGAGAAAAACCACACAAATGCACGTTCGAGGGTTGTTACAAGGCGTATTCACGATTAGAAAATTTGAAGACACATTTAAGATCTCATACAGGAGAAAAACCGTATACTTGTGAATATCCAGGATGTGCCAAAGCGTTCAGCAATGCCTCGGATAGAGCGAAACATCAGAACCGAACTCATAGCAATGAGAAACCATATGTGTGTAAAGCGCCTGGTTGTACAAAACGTTATACCGATCCAAGTTCCTTGCGTAAACATGTCAAAACTGTGCACGGTGCTGAATTCTATGCGAACAAAAAGCACAAAGGGGGCGATGGTGGCTCGTCGGAAGATGGTGGTCCAGCTGGTCTGGACGCCAGTCCACGCAGCGAAGACATGCTCAGTGGGAAAACAGCCAGTCTCAGCAGTCCTAGCATCAAATCAGAGAGTGACGCCAATTCACCAGGTCAACACCATGACAGTCCACTTGGTGGAGCTGGACAACTTGGAACCGGTGGCGGATGTCACGATGATCTTGGAACCGGTGATAACACCGTATCGGTTGCTCATCGTGGCGTTGGCCCTCTGGATGACCCCGCGTGGCCGTATGATGCTGAAGATCTTGAGATTGACGACCTGCCAGTAGTTCTTCGCGCAATGGTCGGTCTCGGCCCTGATCGAAACTCCTCAATGCCAGCGGTACCAGAACGAAACGCTCGCAATCGCATGAAATCCCGGTTACAGAACAAATGCCCACCATCCGTTGGTGGTTCACCCGCCATAATATCACTGCCCACTGTACCTCAAAGACGAAGCGTCGCCATCACAGATCTAAACCGAAGGATCACAGACCTTAGGATGGAAAGCGGCACCCAGATACGAACGCAAACAGACATTCAACAAACAAGACTACCGACACTTGGAGGTGGTATAGCACAAATTAGAAGAGATAGCAATTCAACTGTTAGTAGTTACTATGGAAGTATGCGGTCTGCAGATATGAGTCGAAAGAGCAGTCTTGCATCACAGGCCTCAGGTTTACGACCAGGTGGCGGTATGAACGTCGCTCCCACTGGCTCATTCTACGACCCAATCTCCACAGATTGTTCACGCCGCTCAAGCCAGTTATCCACTAACGGAGTTGTAGCGCCAGCTCCGTGTCCTCCACCTACCAACAACAGCAATTCAATGCCACCCGCGCCCCCATCACATTTGTTGGCTGGTCAGTTGCAACGTCTTCAACAACAGCAACAGACGCCAGCGCCACCAGCAATTGTCGGCAACAACAGCAACCTTATCGTCCAGCCGCAACAACAAGCCGCTTGTAATTGGTTGAATGTTTCATCGAGTTTGAATACAACAACGACTGAACAGACTTCAAGACGGATGTCTGAACCGTGCCATGGATTGATGACAGAACGTGTAGGGACTCCACCACCTCCAAGACCTAGCTCAGTACAGTTGTCACCCATTAAGACACCTGGAGACCATCATCCGAACCAAGAAGTTATTTTAGATGAGCTCGGAGAAGGTGAGACAATCGAAAACAAACTTGTCATCCCAGATGAAATGATGCAATACCTAAACCAAGTAGCTGATACACAAAATATTGAAACAACCACAACTGCTCAACAATACCAGTCAAATACCAACACAACCGCACCTCAATCTACCAATGTTACAGTTTGGCATAACTCACCTACAAACAACTGTGTTCCAAGTCCAGCAGCCGCTGTACCACCGGTGATGCCCTCTCCGAACCTTAATCAAATCCTATCATCACCTGCATCAACATTCAATCAATTGCTGCCATCACCAGGTGGCCAAATGCACCATTCGCCTGCATCACAAAACAATCAACTAATGCCATCACCAGCATCCAATCAAATGATGCCCTCACCAGCATCGAATCTAAACCAAATGATGCCTTCACCTACATCTAACTTAAATCAAATGATGCCCTCACCAGCATCAAATATGAATCAAATGATGCCTTCTCCAGCATCAAATATGAATCAAATGATGCCTTCACCCGCATCTAATGTAAACCAGATGATGCAATCACCGGCATCAAATCAAATGATGCCATCACCCGCGTCAAATATGAATCAAATGATGCCATCACCGGCATCAAACATGAATCAAATGATGCAATCACCAGCATCAAATCAAATGATGCCGTCTCCTGCATCGAATATGAATCAAATGATGCCTTCACCTGCATCAAATATGAACCAAATGATGGCGTCTCCGGCCTCAAACTACAGTCAAATGTTGCCGTCGCCAGCTGTTATGTCTTCACCGAGATCACATTCGCAAATGATGCCATCACCAGCTCAACAAGCGATGCCAAGTCCAGGATCTGTGATGTCTGTTCCATGTAATATGCGATCGCCTGGACATCAACACCATCATCACCAGCAACAACAACAACAACAACAACAGTGTTTCAATGGAAGACAATCAGTGAACCAGTGTTATAATAACGGTTGGAGCCGAACCCCATGCCACCTACCTGGTGATCATCATCATGGCAACCAAAGTTGTCCGTCTCGTCAAAGTCAAATGATGGATTACCAACAATCACAACAAGTCCAGTGTCATCCAATGCAACAAAACGGTTTTATGAGTAACCAATGCGTAAATCATGGTTACCAAATGTGTAACCAGTCTCAAAGTAATATGTCTAGATATGCTACAAGTTATCAACCACAGAAACCGGGTTATAGTTGTACACCGCATATAAGTGAGCCATTGTCATCACCAGCGGTTGCAAATACTGCGCCACCGGATCCGATGGGTCCACCTCAGACTGCTCAAATGTCGCGCCCCTGTGCGCATAACAATTATGAACAGTGCTACACAAATGGTTATGGTTGTGGTCATGCATGTATGGTACCAAAAATGAACTGTTATCAACAACAAACAAAAATGTGTTACCATCAACATACCAATGGTGAAATACAGTGTAATGATGTTAGCCAATCTCAGATGTCTCCTGGAATTGTCCAACAGGTACAAGCTCAACAGCAGTTACAAGCTCAACAAAATTTGGCTCAAACTCAACAAGCTCAAACTCAACAGCCTCAACCGCAATCGGGTCAAACTCAACAGGCTCAATCTCAAAATGCAACAAATATGAGGTCAGATGCCTACCAAAGAACACTTGAATATGTGCAAAGTTGTCAATCCTGGGTTGGACATCCAGATACTGTTTCTAGTAGTACTGGATATTCTTTACTGGGTAAACAGGAAACATCTAATATGGTGGTTAATGATATGACTTCTTCGTTAACATCATTATTAGAAGAGAACCGTTATTTACAAATGATACAGTGA
Protein Sequence: MNLIDCELAYISSRHPFIQARRCITKITTGGGSGLTSGSAGGGGPGGGELGGGTRLHPALHRLPPHYMDHLTAAAYTLHSSAAIHAAGLGLSPEYLSARGLSVSDLHPASTLASTEFPFSLDGSRLNSPRPGGGGGSVRASRKRALSSSPYSDSFDINSMIRFSPNSLASIVNGSRSSSASGSYGHLSAGALSPALGMHPGVHLQQLQAHLLRSATGLLPLPPPPPQPQPPPVYSLAHHPLHPHSVSSVLNHKPDKLDLGEEVRRPARVKKEPPQQQNQCGGVSSTHPGGGETAGAADGGGDLKDEPGDFIETNCHWRECSTEFPTQDDLVKHINNDHIHANKKSFVCRWEGCSRAEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCYKAYSRLENLKTHLRSHTGEKPYTCEYPGCAKAFSNASDRAKHQNRTHSNEKPYVCKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGGDGGSSEDGGPAGLDASPRSEDMLSGKTASLSSPSIKSESDANSPGQHHDSPLGGAGQLGTGGGCHDDLGTGDNTVSVAHRGVGPLDDPAWPYDAEDLEIDDLPVVLRAMVGLGPDRNSSMPAVPERNARNRMKSRLQNKCPPSVGGSPAIISLPTVPQRRSVAITDLNRRITDLRMESGTQIRTQTDIQQTRLPTLGGGIAQIRRDSNSTVSSYYGSMRSADMSRKSSLASQASGLRPGGGMNVAPTGSFYDPISTDCSRRSSQLSTNGVVAPAPCPPPTNNSNSMPPAPPSHLLAGQLQRLQQQQQTPAPPAIVGNNSNLIVQPQQQAACNWLNVSSSLNTTTTEQTSRRMSEPCHGLMTERVGTPPPPRPSSVQLSPIKTPGDHHPNQEVILDELGEGETIENKLVIPDEMMQYLNQVADTQNIETTTTAQQYQSNTNTTAPQSTNVTVWHNSPTNNCVPSPAAAVPPVMPSPNLNQILSSPASTFNQLLPSPGGQMHHSPASQNNQLMPSPASNQMMPSPASNLNQMMPSPTSNLNQMMPSPASNMNQMMPSPASNMNQMMPSPASNVNQMMQSPASNQMMPSPASNMNQMMPSPASNMNQMMQSPASNQMMPSPASNMNQMMPSPASNMNQMMASPASNYSQMLPSPAVMSSPRSHSQMMPSPAQQAMPSPGSVMSVPCNMRSPGHQHHHHQQQQQQQQQCFNGRQSVNQCYNNGWSRTPCHLPGDHHHGNQSCPSRQSQMMDYQQSQQVQCHPMQQNGFMSNQCVNHGYQMCNQSQSNMSRYATSYQPQKPGYSCTPHISEPLSSPAVANTAPPDPMGPPQTAQMSRPCAHNNYEQCYTNGYGCGHACMVPKMNCYQQQTKMCYHQHTNGEIQCNDVSQSQMSPGIVQQVQAQQQLQAQQNLAQTQQAQTQQPQPQSGQTQQAQSQNATNMRSDAYQRTLEYVQSCQSWVGHPDTVSSSTGYSLLGKQETSNMVVNDMTSSLTSLLEENRYLQMIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041294; iTF_01039687; iTF_01040410;
90% Identity: iTF_01041294;
80% Identity: -