Basic Information

Insect: Leistus spinibarbis
Gene Symbol: -
Assembly: GCA_933228875.1
Location: CAKOGB010000126.1:90093-106376[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00017 0.014 16.2 0.4 6 23 425 442 425 442 0.99

2 9 5.5e-05 0.0046 17.7 1.6 2 23 449 470 448 470 0.96

3 9 0.0061 0.51 11.3 5.4 2 23 479 500 478 500 0.97

4 9 0.00015 0.013 16.4 0.3 1 23 508 531 508 531 0.97

5 9 2.4e-05 0.002 18.9 2.6 1 23 537 559 537 559 0.98

6 9 1.2 97 4.1 0.4 2 23 568 590 567 590 0.93

7 9 4.6 3.8e+02 2.3 2.7 1 19 598 616 598 621 0.91

8 9 0.00012 0.0097 16.7 2.7 1 23 626 648 626 648 0.97

9 9 3.7e-05 0.0031 18.3 2.0 2 23 656 678 655 678 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00017	0.014	16.2	0.4	6	23	425	442	425	442	0.99
2	9	5.5e-05	0.0046	17.7	1.6	2	23	449	470	448	470	0.96
3	9	0.0061	0.51	11.3	5.4	2	23	479	500	478	500	0.97
4	9	0.00015	0.013	16.4	0.3	1	23	508	531	508	531	0.97
5	9	2.4e-05	0.002	18.9	2.6	1	23	537	559	537	559	0.98
6	9	1.2	97	4.1	0.4	2	23	568	590	567	590	0.93
7	9	4.6	3.8e+02	2.3	2.7	1	19	598	616	598	621	0.91
8	9	0.00012	0.0097	16.7	2.7	1	23	626	648	626	648	0.97
9	9	3.7e-05	0.0031	18.3	2.0	2	23	656	678	655	678	0.96

Sequence Information

Coding Sequence: ATGGAGAACAGTAGTCAATATATTCCATTTGAAATCGATAATGACATGGTGCAAAATTGGTTGAACCATTCAATTCAAACCATAAAACATTTCCCCAAACCATCAGTTGATAAATTCACAGCGAAATTCGTTATGTACACATGTGATATGTTCGATCTAGAGAAAGACGTATTCTTTATGACGATCGACTTAATCGGAAAATACGATTGCACCCGATTCCCATCGGAAGATCCGATATTCACAATTCTAACGTTAATTTACATTTCAAATAAACTTGTCGGACAAAGATCGTCGTTATCAATAACAATGTTGCGAATATATTTACATAAAACTGGTTATAAGAACTGCACGAAGAAAGTTCTCGAAAATTTGGAAGTGGATATAATGAAAAGATTGGAATACGATTTACCGATTTGCTCAACAATGGACGAATTGAACGTTTTAATTGAAGTTTTAATTAAACCAGAAGCTTTTAAGGTGCACTTTCGTAAGCAATGTCTTTGTGTGTTAAATATTGTTTATTTGCATACGAAAACTGTGACTGATGTATTGGATGAAATCTACGCGAAAAGTGAAGAAATGCAAATAATATTGCAAACGCTTTACGAGAACAAACTATATTTTCCTGCCGGTGTATTACTTTGCGCTGTTATGTTGTCTAAAGGGACCAATTTAGTCAAATTGAATGTGCTAGAAAGTGATCCATTTTCTAAGGTTTTATGTAGACCGTGTGTTATAAAATTGAACGATTTTCATAATTATGCTCTCCTAGTCAAAAAGAATCAAGAATTTTTAATTAAAACGTATAGTCCGTCGATTGCTGAAAATATATCCTGTTTAGAAAATGAAGATACCAAACTTGATGAGAAGGAAAAGGAAGAAAATGAAAAGATTGTGAGTGAAAATGTAGGTTTTGTTGAAGACAACGTGAATAGTGCAAAAGATACGAAACATACGGTAAACTATGACACGGAAAACTCTTCTAGTTGCAATTATAACGAAAACGACGCAGAAGATATTCCTGATTTAAATCCAGAAGTTAATTTAAGAGAATCCGATGAATCTGATATTAGTGAAGAAATTGATACAACAAAGAGTAAAAAATCATCAGGAAAACGTATGAATTTTCCGGAAACACCAAACGACATAAAAATAAAGAAGTTTTACAAATACGAATGTTATTTATGTAAAGAACATCCGGAAATCCGAACGTTTCGAGCGTTGAAAATCCATTACAACAGTAAACATGCCATAATGGCGTATATTAAATGTTGCGGTAAAAAATTCACGCGGCCGCATGCGCTGGTGCAACATATACGAGAACATTTGATGCCCGACAGTTTAATTTGTTCGATTTGCGGCAAAAAACTGCGTACGAAGCACACGCTGCTGCTGCACATGGACACCCATGTGCCCGCCGAAGAACGCCCGCTAAAATGCAACAATTGCGATATGCGTTTTGTCCGCAGACACTTTTTACATCAACACGAAAAGATACACATGACTGACGACCAACTGAAGTATATCTGTGATTTATGCGGAAAAAGGTTTCCAACTGATTGGCGATTGAAGACTCATTTGAATGTAACACATTCTGAAGAGAAGCCATACTTTTGTGAATTTTGTGCTAAATCATTTAAATCGAAGATTCAGTTAACCAATCATATGTACACACATGGAGACAAGGATAAAGTACACAAGCAATGTGACCGCTGCGGCATTTGGTTAAGATCTCCGCGTTCCTATTACGTCCATATGAAAGACAAACACGACGAAAACGCACCGAAAAGCTTCGCTTGTGATAAATGTTCGCATATAAGTCCTACAAAAAAGGCTTTATATGCGCACTGTATTAATAAACATGGCCCGAAAAAGCACAGTTGCATGTATTGCAGTGAAATGTTTTCCAGTTCTAATTTATTAAAGAGCCATATGATTAAGCACACTGGACCCGGTGAACCATTGAAGTGTCCATATTGTCCGAAAACATTTAGTTTTAGATCCGGATTTTATTCGCATAAGAAAAAAGTGCATCCAAACATGACTGATCATCAAATTCATTCGTGA
Protein Sequence: MENSSQYIPFEIDNDMVQNWLNHSIQTIKHFPKPSVDKFTAKFVMYTCDMFDLEKDVFFMTIDLIGKYDCTRFPSEDPIFTILTLIYISNKLVGQRSSLSITMLRIYLHKTGYKNCTKKVLENLEVDIMKRLEYDLPICSTMDELNVLIEVLIKPEAFKVHFRKQCLCVLNIVYLHTKTVTDVLDEIYAKSEEMQIILQTLYENKLYFPAGVLLCAVMLSKGTNLVKLNVLESDPFSKVLCRPCVIKLNDFHNYALLVKKNQEFLIKTYSPSIAENISCLENEDTKLDEKEKEENEKIVSENVGFVEDNVNSAKDTKHTVNYDTENSSSCNYNENDAEDIPDLNPEVNLRESDESDISEEIDTTKSKKSSGKRMNFPETPNDIKIKKFYKYECYLCKEHPEIRTFRALKIHYNSKHAIMAYIKCCGKKFTRPHALVQHIREHLMPDSLICSICGKKLRTKHTLLLHMDTHVPAEERPLKCNNCDMRFVRRHFLHQHEKIHMTDDQLKYICDLCGKRFPTDWRLKTHLNVTHSEEKPYFCEFCAKSFKSKIQLTNHMYTHGDKDKVHKQCDRCGIWLRSPRSYYVHMKDKHDENAPKSFACDKCSHISPTKKALYAHCINKHGPKKHSCMYCSEMFSSSNLLKSHMIKHTGPGEPLKCPYCPKTFSFRSGFYSHKKKVHPNMTDHQIHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -