Lspi020648.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000866.1:169641-176256[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0079 0.66 11.0 0.1 1 23 100 123 100 123 0.93 2 12 1.3 1.1e+02 4.0 0.1 2 19 163 180 162 180 0.95 3 12 1.4 1.2e+02 3.9 1.1 1 23 190 215 190 215 0.77 4 12 0.00089 0.075 13.9 0.4 1 22 221 242 221 244 0.91 5 12 5.9 4.9e+02 1.9 0.1 1 19 823 841 823 846 0.70 6 12 0.17 14 6.8 0.3 3 23 916 939 914 939 0.89 7 12 0.12 10 7.2 5.2 1 23 989 1011 989 1011 0.97 8 12 0.03 2.5 9.1 0.5 3 23 1016 1036 1015 1036 0.96 9 12 7.9e-05 0.0066 17.3 1.2 1 23 1042 1064 1042 1064 0.99 10 12 6.3e-06 0.00053 20.7 0.3 1 23 1070 1092 1070 1092 0.97 11 12 0.00015 0.012 16.4 2.7 1 23 1098 1120 1098 1120 0.98 12 12 4.8e-06 0.0004 21.1 6.5 1 23 1128 1150 1128 1150 0.98
Sequence Information
- Coding Sequence
- ATGGGCCAGAAAAAGAAATTTAGACCTTACAGAAGAAGGCGAGGAAAAGCTTGGGGAATTAGAATGAATGAGTTAAGGATCGCCAAAAAGGCTGCGGCGGAAGCTCTGGCTCACCCAAAACCGGACGCCATTAAAGAAGAACCAATGGCTCAAGATGATCCTTACAAATTTGAAGAAACTAAGTATGATATAGACCCGTTAGCCCACTTGGAGGTAAATATGATCGTCCAAGAAATAAAAACCGAACTAGAACCAACCCCACCAGTTCAACTCGAACCGATTCATGAAAAACTAGATTTCGTGTGTTCTATATGCGGATTAGACTACGCATTCGATGACCACCTCGAAACCCACATTTACTGGGTGCATCGCCCGCTAGCATTAGAAGTAATCTCAAGCTCCGAAATATACTGCACAAAATGTCGAAAATGGTATGCGAAAGAAAGCGATTTCGACAACCACTGGCCGTGCTTCGGGGTAATAAGTCGCTGCCCGATTTGCTACATTATCTCGCCAACAAAATACCATTTTTTAGTGCACGACTTGACGTGGCTGAACCAGAAATCGTATCAATGCAACTTATGTGATATAAACACGTCTATGTTTCCGTTGTCGCAATTAAATATTCATATGAAACTGAACCATAAGAAAATTGGGATTTATAAATGTACGCACTGCCAGGAAATGTTCCCGGTGTTGGCCTCGCTGATACGGCATGTTTACGACGAGCATGATGGCATGATGTATAACACTGATTTGGCCAGTATTCATTCATCCGGGATTTCGATTACTAATAACACGATTGATAAAATACTGGAAATGCCGCTAACGCTCAATAAGTCCATCAAATCAACTTATACTCGCAAACCAGTCAATCCACAACCAATTGATGAAACCCCTATTACACCTTTAACTATGCCAGTATTCGTCCCAAAAATATCAATTAATCCAAACATATTCATCAATAAAAAAGTCCCGGAACCCCCTGTATTTATCGCAGAACCATCGTTCGAAAATATTAGAATGAATCCGACTTTGTATGGAGAAATAGAACCGTTTGAAGAATCTACCGTTAACCAAAATGAAGAAACGAAGGAAACCGATCATTTTAATCGTAATGATAATTGGGTTTCTCAAACACCACCATTTGAAGATATTAGAAATGCAAGAACCGGACAATTTGAAAACGTGAAAATATACTGGGCAATTGATACTGTATCAAAAGAAGTAACTACTAGACACACTGAACTATATTCGGATCAACTAGAAGTAAAGAAATCCAAAAAAGCTATTACGTATAAATCCGGCAAGAAAACATCTCGTATATCCATACCCATCGTACAACCGGATAAACTCGATACACATAACATCGATGCTTCAATTACAAACAAATCCAATACACTTATAGAATCCGAATGTTTAGTTTTAAACACAGAAAAAACCGTATCGGAGATAAATCAACCCATCACTTCAATACGATCCAATCACATGTCTAACACAGTTAAAATTGCCCCTGATTTATCTATATGTATTTCACAGCAATCGGATAAATCCGATTTTCCTACTACAGTGTCTGATGCTTTAAAAATATCAATAGCTGCTAAACTATCTAAAACTTTAAAAAAGTATCCAAACAAAAAATTAGCCAAATCTAACGAATTAAACGATTTCATAACGGATAAAACCGTTATAGAGAACGAATCTGTACCTAACACAGACTTTAAAATGTCAACAGCTTCCAAATTCTTCAATCAACCTGATTGCAGTATTTTAAATAATAAGATATCCCAAATACCGGAAAAATCAGTCACGAATGATTTATCTAATTGCCATACAGATGCAACAGAGTCATTTAAAAATGCGATAGTTTCCAATTTTTCTAATGCGTTTAAAAAATATTTATCCACTAAAGAATCGGAAATAAATGTAGCAGATGTTTCTATGACGGATACATCCGAATTTTCTAGCATAGATGATTCAGACAAAGAAAAATCGGATGATGAACCAGAAACGGAGGAGAAACCTAATATTGATGTGTCTGCCACGGAAATATTCGTACCCAGTAATTCTAAAGTTGTATGCAAATACGAAGAACTAGAAACGGATGAATCCGCCACGGAAATAGTACCCAGTAATTCTCTAACGGATAAATCCGTTGCTGAAGCGTTCAACTCGATTAGTGAAGTACCAAAAACGACTAAATCCGTACATATAATCGACGATTCGATCCTAGCGAAATGTCTAGCGCCTAATAACTGTAGAGCTATAGATTTGCCAACGTTTGCCATCGATCATATTCCAGAAAATGCCCAGACATTAGATGACAGTTGGAAAATTTCGTACACCAATGAGCAAATGGTTGAAAGTCCGGCTGCAGCGCCAGTGTTCATTCACCACAAACTGGATCGAGTGAAACGGGACAAAAATATGTGTACACATACACAGATTAAGAAATTTTGCAAAATATTCATTTGTGATATATGCGATATGGACTTTTTAAGTGGTTGGGACCGAAGGCGACACAGTCAGATTGTCCATCGGCCGTGGACTATAGAACTAGAAGATGGCGCGTATTGCGTGCGGTGCAAACGGTGGTTTAAGGATGAATTCCTCTACCACGGACATGCGCCTTGTTACGTTTTCGCTGTGAAAAAACGATGCCCGATCTGTTTCGTCGAAAAACCAACACTAGAACATTTTAAATTACACAATGTTACGTTTTACCCCAGCGATTGTACTTATTGGTGCACTTTATGCGAAGTAAATAAAACTTTCTATCGCTTAGAAGAATTGAACACCCATAGGCAAGAAGTCCATAAACAAAACGGCGTCTTCGAATGTATAATGTGTGAGAGTACGTTTAAAGACATCAAAATAGTAAAAAAACATATATTAGACGTCCACCAAAAACAAGGAATAGTCACTGGGGTGAATTTACGCACAACATCAGTACCATTACGTTTATACAATTGTAAAATATGTTCAAAAACATTTTTCGAGAAATATCGGTTCGATAGCCATCACCAAGTGCACGAAGGGGCCCTATGCAGCGTTTGCGGCCAAACTTTTAAATCCAGAGCGATAATGTTCGAACATTTAAACAAACATACAAAACAACAAATTTATAAATGCAAAGAATGCGAAGCATCATTTGTGATGCGAAAATATTTAACGCAACACTTAAAGATTCACAAAACTAAGAAAAACTTCAACTGTGAAGTTTGTGATCAGTCGTTCACGCAACAAACATCTTTAATATACCACATGGCTGTTCATACTCAAGAGAACATTTTCAAATGTACAATTTGCCATATTAAATTTGATTTGCAAAGCAAATTAAGTTCACATATGCAAATACATATTGCAGACGGTACGAATCCGCACGTGTGCAAATTATGTGGCAAGAATTTTTCGCATAAATGTAATTTAATTGTGCATATGCGAATGCATCCAGATTATAAGGATGATAGCTTGAAAATTGATATTGTTGCGAAAAATGAGGATAAAAGTGATTCGTCCGAGGGGGAAATATCGCTGCATGATGAATCTGATACGAGCGAAGATGAAGAGGAATCGAATGAAGACAAGGAGAATTCATAA
- Protein Sequence
- MGQKKKFRPYRRRRGKAWGIRMNELRIAKKAAAEALAHPKPDAIKEEPMAQDDPYKFEETKYDIDPLAHLEVNMIVQEIKTELEPTPPVQLEPIHEKLDFVCSICGLDYAFDDHLETHIYWVHRPLALEVISSSEIYCTKCRKWYAKESDFDNHWPCFGVISRCPICYIISPTKYHFLVHDLTWLNQKSYQCNLCDINTSMFPLSQLNIHMKLNHKKIGIYKCTHCQEMFPVLASLIRHVYDEHDGMMYNTDLASIHSSGISITNNTIDKILEMPLTLNKSIKSTYTRKPVNPQPIDETPITPLTMPVFVPKISINPNIFINKKVPEPPVFIAEPSFENIRMNPTLYGEIEPFEESTVNQNEETKETDHFNRNDNWVSQTPPFEDIRNARTGQFENVKIYWAIDTVSKEVTTRHTELYSDQLEVKKSKKAITYKSGKKTSRISIPIVQPDKLDTHNIDASITNKSNTLIESECLVLNTEKTVSEINQPITSIRSNHMSNTVKIAPDLSICISQQSDKSDFPTTVSDALKISIAAKLSKTLKKYPNKKLAKSNELNDFITDKTVIENESVPNTDFKMSTASKFFNQPDCSILNNKISQIPEKSVTNDLSNCHTDATESFKNAIVSNFSNAFKKYLSTKESEINVADVSMTDTSEFSSIDDSDKEKSDDEPETEEKPNIDVSATEIFVPSNSKVVCKYEELETDESATEIVPSNSLTDKSVAEAFNSISEVPKTTKSVHIIDDSILAKCLAPNNCRAIDLPTFAIDHIPENAQTLDDSWKISYTNEQMVESPAAAPVFIHHKLDRVKRDKNMCTHTQIKKFCKIFICDICDMDFLSGWDRRRHSQIVHRPWTIELEDGAYCVRCKRWFKDEFLYHGHAPCYVFAVKKRCPICFVEKPTLEHFKLHNVTFYPSDCTYWCTLCEVNKTFYRLEELNTHRQEVHKQNGVFECIMCESTFKDIKIVKKHILDVHQKQGIVTGVNLRTTSVPLRLYNCKICSKTFFEKYRFDSHHQVHEGALCSVCGQTFKSRAIMFEHLNKHTKQQIYKCKECEASFVMRKYLTQHLKIHKTKKNFNCEVCDQSFTQQTSLIYHMAVHTQENIFKCTICHIKFDLQSKLSSHMQIHIADGTNPHVCKLCGKNFSHKCNLIVHMRMHPDYKDDSLKIDIVAKNEDKSDSSEGEISLHDESDTSEDEEESNEDKENS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -