Lspi001340.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- THAP6
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000023.1:23054-27286[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00013 0.011 16.6 0.7 1 23 297 320 297 320 0.95 2 12 2.2 1.8e+02 3.3 0.6 6 23 384 402 380 402 0.87 3 12 0.011 0.92 10.5 1.6 3 23 427 447 425 447 0.95 4 12 0.0025 0.21 12.5 5.5 2 23 451 473 450 473 0.92 5 12 0.00011 0.009 16.8 2.9 3 23 573 593 571 593 0.97 6 12 4.5e-06 0.00038 21.2 3.1 1 23 599 621 599 621 0.98 7 12 4.7e-05 0.004 17.9 3.6 1 23 627 649 627 649 0.96 8 12 0.0045 0.38 11.7 0.6 1 23 655 677 655 677 0.98 9 12 0.0034 0.28 12.1 0.7 1 23 720 742 720 742 0.98 10 12 0.00013 0.011 16.6 1.4 1 23 748 770 748 770 0.98 11 12 2e-05 0.0017 19.1 2.8 1 23 775 797 775 797 0.97 12 12 6.9e-05 0.0058 17.4 0.3 1 23 803 825 803 825 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTGTGTGCGGTGCCTGGCTGCGCAAATAGTTCTAGAAATACGAAACGAAAACAAATTGCGAATGGAACGCAACATGCAACGACATTCCATAAGTTTCCCAATAATATGGATATGTATAAAAAATGGATATTGGCTATAAATCGAAAGAATTGGTTTCCACAAGTGAAATCGAAAATTTGTTCTGATCATTTTAAAGAGGAATTCTTTGACCGATCTTCGCCGTTTCGTATTTCTTTGGCATTTAATGCGATTCCAAGCATATTCCGAAGATCAATCGTAAATAGCGATAAATCCAATTCAGAAGAAGATGATCCACCTTTTCCTGGATTAGATACCGAAATGAGTAGCAGTAATTCTGCTGCTGTTAAAATAGAAGAAAAAGAAGAAGAAGAAATCACATTTGAAGAAATTAATTCTAGTCCCAAAGAAAGTATATTAATGAGAACACTTAAAGAGAAAACCATCGAAAAACGGCGAATTGATGTTGACGCAACAGATCCACGGACTTATTGCAGAATTTGCGCAAAACTTTCCCCAATTTCTTTACTTTCTTCTCTTTACAACAGTGCCAAAAGTTTGGAATAtttggccttgttggatttactcctaccaggattgATTAAAGTCGATATTAGATTACCGACTCATATTTGCAAAATATGTTCGGGTAGATTAGAAAATATTAGTGCATATATAAATAATTTCAAAAAATCGGATGATGAACTCAAAAGAATGTTCAATGTGAAATATGAGACTGAAGATGACATAGTAAACCCTAAAAAAGAAGACAACTCGAAAAAGAAGGGTTCAAACAGCGAAAATAATACATATCCGTCTTTATTAGACGAAATCACTGAAATTAGCGACATCGAAATGATAAATTTCGAATGTACACAATGCAACAAACTATTCCCAACAAAATCCGACTTAGTCCAACATTCACTAAAAATCCATTCTGTATCAAAATTCGATAAAATCTCTTGTAAAATGATTCAAACAAAACTATCGGAAGAGCCTATCGAGTCCGAGCAAATCGACGACAAAACGGAGGAAATTCAAGAAGATTTGGATGACCCAGTGGATGAATCAAGCAGTGATGATGAACCAGTCGAGAGTGCATCGACGCAAACTTATTGTATCATTTGTTGTGCTGTGTTTGATACGCGGACAGCGTTGATAAGTCATACGCAAACGTTTCACCAGATCATTGGGAAAGATTCGTTCGCGAATCGCGCAATTACGAAAAACTTGATAAGTAAAGGCGTTATTAATTGTACGCGGTGTCCGGAGTCGTTTTGTTCGCTGAAAGCGTATCGGCAGCATGTGCTTCAACATGTTGTATTGAAGTGTGATCAGTGCGACAAACAGTTTACGAGCGCGCACAAGTTGAATAATCATCATTATAATAAACACATTTTGCCCGAACCGCCCGATGACGAAGATGCGGATGATTGCGCCGTTACTAATGACACTGGTGATGCGGAGACTACGAAGAAGAAGAAGGATGCTGAAGTTAAGAAGAAACCACGCAGGAGTTTTTCTTCCGGTAAGGAAATATACTACCTAAATGTTAAATATTTCGTGATAAGATATTGTATTGCGATTGGGCTCGCTGGTAGCACTGGCGCTAGCGTTCTTGTTTACTCTCGCATTATATCCGATGAGTTTTCAGAAGAAATTCTGTTTGAATTTGCAGCAAAATCCTGTCTGTGCAGTATATGCGGCAAACTCTTCGCCTCCTCCACCCATCTCGCTCAACATCGTCGAGTACACATCACCGCCCGCAACTACCCTTGCCCAAAATGCTCAAAAGCATTCAAAACATACACCCACCTCGCGAAACACCAATACACACACAGCACCGAGCCCAGTTTCTGTTGCCAGATTTGCGGCAAAACATTCCGATCGCCTGGCGGTTTGCACAAACACGCCTACCGTCACAAAGACACAAAACCGTATCATTGCGAAGTTTGCGGTCGCGGTTTCCTGTTCCCCGCGCAACTAGCAATGCACCGCAAACGGCACGAGAATTTGCGACGGGTCGACAGTATTAATTGCCACGGCAACAAATGCCGTTTGTGCAGCATTGAATTAAACAGTTTTAACGAATTGAAATCGCATTTTTATTTAGAACATGCCGGATTTAAACCGTATGAGTGTGACGAGTGTAAAGTTACGTTTTGGACGAAATATCAGTTAGATGTTCATAAACGGTTGCATTCGGGTGAGAAGCCGTATGAGTGTGATAAGTGTGCCGCGTGTTTTCGGAGCAGTTCCGGTTTGCAGCAGCATCGGTCGGTGCATAGTATGGGCGATTTTGCGTGTTCGACGTGTTCGAAGATGTTTAAGCGGCGCGAACATTTGGTTATACATGAACGGACGCATACAGGTGTGAAAATGTTCCCGTGTCCCGGTTGTGATAAGGTTTACTCGCAGAGGCAAACTATGTTGAAACATAGTCAAATACATGATCCGAATTTTAATGAACGCGCGAATAAAATTGCGAATTCTTATAAACAACGGGCGAAATTGATACAGCAACTAGAAGAGGAGGAAGAGGAGCCAGAATCGGATGAGGAGATTTTTAAGCAGTCGATATTAAGGATTGAGCGTGGCGCAACCATTGATGGTACACCGATTATGGAGTTCATTCGATATAACTGA
- Protein Sequence
- MSVCAVPGCANSSRNTKRKQIANGTQHATTFHKFPNNMDMYKKWILAINRKNWFPQVKSKICSDHFKEEFFDRSSPFRISLAFNAIPSIFRRSIVNSDKSNSEEDDPPFPGLDTEMSSSNSAAVKIEEKEEEEITFEEINSSPKESILMRTLKEKTIEKRRIDVDATDPRTYCRICAKLSPISLLSSLYNSAKSLEYLALLDLLLPGLIKVDIRLPTHICKICSGRLENISAYINNFKKSDDELKRMFNVKYETEDDIVNPKKEDNSKKKGSNSENNTYPSLLDEITEISDIEMINFECTQCNKLFPTKSDLVQHSLKIHSVSKFDKISCKMIQTKLSEEPIESEQIDDKTEEIQEDLDDPVDESSSDDEPVESASTQTYCIICCAVFDTRTALISHTQTFHQIIGKDSFANRAITKNLISKGVINCTRCPESFCSLKAYRQHVLQHVVLKCDQCDKQFTSAHKLNNHHYNKHILPEPPDDEDADDCAVTNDTGDAETTKKKKDAEVKKKPRRSFSSGKEIYYLNVKYFVIRYCIAIGLAGSTGASVLVYSRIISDEFSEEILFEFAAKSCLCSICGKLFASSTHLAQHRRVHITARNYPCPKCSKAFKTYTHLAKHQYTHSTEPSFCCQICGKTFRSPGGLHKHAYRHKDTKPYHCEVCGRGFLFPAQLAMHRKRHENLRRVDSINCHGNKCRLCSIELNSFNELKSHFYLEHAGFKPYECDECKVTFWTKYQLDVHKRLHSGEKPYECDKCAACFRSSSGLQQHRSVHSMGDFACSTCSKMFKRREHLVIHERTHTGVKMFPCPGCDKVYSQRQTMLKHSQIHDPNFNERANKIANSYKQRAKLIQQLEEEEEEPESDEEIFKQSILRIERGATIDGTPIMEFIRYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873083;
- 90% Identity
- iTF_00873083;
- 80% Identity
- iTF_00873083;