Lspi010386.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000214.1:497240-505080[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.13 13.2 0.3 2 23 143 165 142 165 0.94 2 19 4.6 3.9e+02 2.2 0.9 1 13 274 286 274 287 0.88 3 19 0.00039 0.033 15.0 1.5 3 23 302 323 300 323 0.94 4 19 0.0025 0.21 12.5 0.1 1 23 510 533 510 533 0.95 5 19 0.28 23 6.1 2.7 2 23 543 564 542 564 0.96 6 19 10 8.3e+02 1.2 6.9 2 20 640 658 639 660 0.93 7 19 0.34 29 5.8 0.1 1 23 671 694 671 694 0.92 8 19 0.029 2.4 9.2 0.6 1 23 700 725 700 725 0.97 9 19 0.0018 0.15 13.0 0.7 2 23 736 758 736 758 0.96 10 19 0.18 15 6.7 1.3 1 23 765 788 765 788 0.96 11 19 0.0055 0.46 11.4 0.3 1 23 794 816 794 816 0.97 12 19 1.4e-05 0.0012 19.6 4.2 1 23 822 844 822 844 0.98 13 19 8.4e-08 7e-06 26.6 4.5 1 23 849 871 849 871 0.98 14 19 0.0017 0.14 13.1 2.8 1 23 877 899 877 899 0.97 15 19 0.0001 0.0087 16.9 4.9 2 23 906 927 905 927 0.95 16 19 0.00024 0.02 15.7 0.3 3 23 935 955 934 955 0.97 17 19 0.0017 0.14 13.0 0.4 5 23 964 983 963 983 0.93 18 19 0.00025 0.021 15.7 1.2 1 23 992 1014 992 1014 0.96 19 19 0.011 0.91 10.5 0.9 2 23 1021 1043 1020 1043 0.93
Sequence Information
- Coding Sequence
- ATGGAAGAGGACATAGAAGTACCAGAAAAAATACTACTAAACAAAGTACCAATACAAAACCGTCTAAAAAATACAAAAAAACTAAAAATCCGCGAAACTATCATAGAACCAATCTATAACCTGGAGGAAACACCTGAAGAAATCGCATTATTACGTGAACCAGATACAAAAACGACGATAGTCGAACGAGCAATGGGTCAATTCGCAGAACGGGACGAACTATCGGTAAACAGCGTATTTAACCACTCACTTAGTGATGAACCACCATTTATTTGTAAACTATGCAATAGTTGGTTCTCACTGGGTACCAAATTAGAGCTGCATTATATCGTAAATCATGATATATTCCATTGCGAAATTTGTACATGTTTATTCGAAACTTTGGCAGAAAAGAATGAGCATTGCGCTCAATACCATCGGAATATATACTGCGAAATTTGCCAAAAAGAGATTAAAAGTCGTAGTGATTTGTTAAAACATTACGAAAGTGAGCATAATGCGGTTGCTTGTACATTTTGTGGGTTTTTAATTAAACCTAGGGGTATATATGGGGCGCATTTAGAGAAAAAGCATTTGATTTGTTTGGAGTATATTGAGCAACCGACAATAATTGCTGAGAAACGGGAAGCGGAAATAGAGTATTTTTGCGGATTGTGTAATAAGAGCCGGGAGATTGATATATTTTATGGGCATATGCGGTCTTACCACAAAATACATAATACATCGTTGATGAATTTAGTCGAAAATAAACTAAATTTTAAAATAAATGGCGCCAAACTTGAAGAGAAAAACACGGGGAAGAAAACCAATAGTACAAAACATACGTGTAACATTTGCCAAAGTAAATTTACAAAAAAAATCCCAGCCAGTTTTCACAGCGTTTACTGTTTAGGAAAAACTATATGTAAACACTGTAATAAAACATTTGATTCGCCTGAATTATACGAAATGCATTTACAAAATAGTCATTTAAAATTCCCTTGTATTTTAGGCTGCGAGAAATTAAATTACAACACTGAATTAAATCTTTCAAAACATTATAATAAATTCCACGATATAATTCTATGTAGATACTGTGACGTATTTATTTCATTAAACAACGATAAATTTAATAATCATTTATTAGAATTCCATAATTATACTTCAAATATAATGAAAAACTTCACAGATTCATTATTTGAAGTAACAGAAAATAATAAAAATAAAAATATCGTCATTTGTTGTCTATGCGATGAAAACATAACTTTACTTATAAAAACACCAAATGATATAAACGCGCATTTTCACCAAATCCATTCCGTTTCATTAAAACGTATTACCCAATTAATAACCCAGAAACCTGTACTGGAGGAATACGATGAATTTTACCAGGAAATTAACGACGAGATTCAAACGAATGTAACACCCGAAAAACCCCCAGACCCAATGCATAAAACCCATTACTCCGATTCGGATTTAAAGCAAGATTTCGACCCGCAACAAATTGAAATTCTATACAATTATTATACGGATGAAGAAGAAGAAAACTACGAATGTGCATTTTGCAATGAAGCATTTGTGAATGTACAAGATTTAATAAACCATTTAAAAGATGTACACCGCGTCAAAGCGATTTTAAAGGAGAGCAAATGTGACAAATGCAAACAAACGTATTTCAATGAAATCTCCTTTTTGAAACATTTTGAGAAACATAAACCGAATAGCACGAAATTGTTCAATTGTAGCTGTGATAATAAAGTACTATTTACATTAGCGTACCGACATATTTTACAATTCCATTCACATGAATTAGATACATTCGATGTGGATAGAGTAGGAATTAAATGTCGATATTGTGAATTGAAATATTGGAAACGTATCGAATTGAATGACCATGAGGTCGAAGTGCATTTTGCAGAAAATTCAACCGATTTCCTGAAGTGTTATAAGTGTCTTACAATATTTAGTAGCCAGAATTGCCTTAAAGACCATAAATGTCACCAAGATGCAACACCATTTACTCAAATCACCTATAAATGTCTTCAATGCACTGCAGTCTTTCCAAACATCGAATTAGTTAGAGAACACTTTAATTTAGAGCATCCAGAATTCAAAGCGTATGTATGTCCAGTGCCACACTGTTATAAAACGATTCTACGGATAAAATCGCTCAAAAATCATATGCGTATGCCGCATCCGCTTAAGAAGAAAGTCGCCAAAGCCGAATCGTGCAAAATATGTGGTAAAATATCGAAAAATCAGCGATCTGCCACGATACACATGCTGATGAAGCATCGCAGGGAAAAGGCGGGGTTTCAGTGCCGATTATGCCGCGAGAGGTTCCCCACAATAGAGCAGCGGAAACTTCATTACGCAACCAAACACCCAGGAGAATTAGCTTATTCCTGTTTAATATGTGGCAAAGGCTTTTTAAGTAAATCCGGATTATATGGCCATAAGAAAATTCATCAAAATAATGAATTTTTTGAGTGTAAatattgcaacaaacattttactCGAAAGGATTCATACAACGAACATTTATTAATACATATTGGGCCAAGACACCAATGTCCACATTGCCAAAAAGCTTTTACCCAACGATCCAATTTGACGCGGCATGTGCGCATCCACACTGGGCAGAAGCCATACGCGTGCACCTATTGCGAGAAGAAATTCAGCGATCAAGGCTCTTGTCGATCCCACGAACGGGTGCACACAAAAGAGGAGCACTGCGAATGTTCCTACTGTGGCAAAAAGTTCAGCAAATGGCAAAAATTAAAATACCACATTAAATTCCATACTGGAGAAGGTCTGGTCGATTGTGAGGTATGCGGCAAACAGTTTTCCAACACGTATTCCCTGGGGGAGCACAGAAAAATACATAACCAACAAACATTGGTCATGTGTAACTGTGGCCGCGGTTTTAGCAGCGAGAAATATTTACAGCGGCACATGGCAAATGTTCACGGCGACCCGCAAAATACACGGAAATATTTGTGCCCAATTTGTTACAAACCATTATCGCATAAATCATCGTATTTAACACATATTATGACCCATGCAAATGTTAAACATATAAAGTGCACTCTCTGCGACAAAGAGTATCAAACGCGTCGAACCGTCCGTAAACACTTAATCGAGCAACATAACCTCACACCCTCAGCAGACTACACAATATATTTCAAGGAATTGACACCACAGGATGTCGGATTAAACGTACCACCCGCTTCAGAAATGGCTACTGTGAACTGTAACGAGTTATTAGACGACGAGAACGTATTACGCATTAATATAACACAGTTACAACCGTTAGACGCGGCTGAAATGCCAGAGTCTAGAATCGCGCCGCTAGATGTCAGTGAAAGCGGTATCAAAATGGAGGTATTAAGTGAAGAGGACGTTGATGATGATGTTGCATTAGTTTGTAGGGCGAAACGGAAGGATAAAACGCCGGTTAAGTATAGTTTAATGAATTGGAAGAAACAGTTGAGTTTGGATGATGAGTTTGATATGTCTAGCGATGAAAGTGAATAA
- Protein Sequence
- MEEDIEVPEKILLNKVPIQNRLKNTKKLKIRETIIEPIYNLEETPEEIALLREPDTKTTIVERAMGQFAERDELSVNSVFNHSLSDEPPFICKLCNSWFSLGTKLELHYIVNHDIFHCEICTCLFETLAEKNEHCAQYHRNIYCEICQKEIKSRSDLLKHYESEHNAVACTFCGFLIKPRGIYGAHLEKKHLICLEYIEQPTIIAEKREAEIEYFCGLCNKSREIDIFYGHMRSYHKIHNTSLMNLVENKLNFKINGAKLEEKNTGKKTNSTKHTCNICQSKFTKKIPASFHSVYCLGKTICKHCNKTFDSPELYEMHLQNSHLKFPCILGCEKLNYNTELNLSKHYNKFHDIILCRYCDVFISLNNDKFNNHLLEFHNYTSNIMKNFTDSLFEVTENNKNKNIVICCLCDENITLLIKTPNDINAHFHQIHSVSLKRITQLITQKPVLEEYDEFYQEINDEIQTNVTPEKPPDPMHKTHYSDSDLKQDFDPQQIEILYNYYTDEEEENYECAFCNEAFVNVQDLINHLKDVHRVKAILKESKCDKCKQTYFNEISFLKHFEKHKPNSTKLFNCSCDNKVLFTLAYRHILQFHSHELDTFDVDRVGIKCRYCELKYWKRIELNDHEVEVHFAENSTDFLKCYKCLTIFSSQNCLKDHKCHQDATPFTQITYKCLQCTAVFPNIELVREHFNLEHPEFKAYVCPVPHCYKTILRIKSLKNHMRMPHPLKKKVAKAESCKICGKISKNQRSATIHMLMKHRREKAGFQCRLCRERFPTIEQRKLHYATKHPGELAYSCLICGKGFLSKSGLYGHKKIHQNNEFFECKYCNKHFTRKDSYNEHLLIHIGPRHQCPHCQKAFTQRSNLTRHVRIHTGQKPYACTYCEKKFSDQGSCRSHERVHTKEEHCECSYCGKKFSKWQKLKYHIKFHTGEGLVDCEVCGKQFSNTYSLGEHRKIHNQQTLVMCNCGRGFSSEKYLQRHMANVHGDPQNTRKYLCPICYKPLSHKSSYLTHIMTHANVKHIKCTLCDKEYQTRRTVRKHLIEQHNLTPSADYTIYFKELTPQDVGLNVPPASEMATVNCNELLDDENVLRINITQLQPLDAAEMPESRIAPLDVSESGIKMEVLSEEDVDDDVALVCRAKRKDKTPVKYSLMNWKKQLSLDDEFDMSSDESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -