Lspi018164.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000579.1:67670-72823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.00039 0.032 15.1 0.9 3 23 205 226 203 226 0.96 2 22 1.6 1.3e+02 3.7 1.7 1 20 334 353 334 355 0.93 3 22 1.5 1.3e+02 3.8 1.2 1 23 378 401 378 401 0.95 4 22 0.18 15 6.7 0.1 2 21 409 428 408 429 0.93 5 22 0.21 17 6.5 0.2 2 23 437 458 436 458 0.95 6 22 0.015 1.2 10.1 2.0 2 23 489 511 488 511 0.93 7 22 0.00015 0.013 16.4 1.4 2 23 518 540 517 540 0.96 8 22 0.016 1.4 10.0 0.8 1 23 550 572 550 572 0.98 9 22 0.00026 0.021 15.6 0.8 1 23 577 600 577 600 0.96 10 22 0.019 1.6 9.7 1.1 1 23 637 660 637 660 0.96 11 22 0.006 0.51 11.3 5.4 1 23 677 700 677 701 0.95 12 22 0.0034 0.29 12.1 0.9 1 23 722 744 722 744 0.97 13 22 0.015 1.3 10.0 0.2 2 23 811 832 811 832 0.98 14 22 0.02 1.7 9.6 5.9 2 23 899 920 898 920 0.97 15 22 0.0017 0.14 13.0 0.1 1 23 931 954 931 954 0.97 16 22 0.023 1.9 9.5 1.9 1 23 962 985 962 985 0.96 17 22 8e-06 0.00067 20.4 2.5 1 23 1027 1050 1027 1050 0.96 18 22 0.0005 0.042 14.7 0.3 1 21 1058 1078 1058 1079 0.96 19 22 3.9 3.2e+02 2.5 1.0 3 23 1130 1150 1128 1150 0.89 20 22 3.8e-05 0.0032 18.2 1.0 2 23 1159 1181 1158 1181 0.96 21 22 3.9e-05 0.0033 18.2 1.7 2 23 1185 1207 1185 1207 0.97 22 22 0.89 75 4.5 0.6 1 23 1249 1272 1249 1272 0.95
Sequence Information
- Coding Sequence
- ATGGATGATATAACACAACAAATAAATAATGTGTGTCGATTGTGTTTATGTGAAGATGAAAATCTTGTGTCGATATTTGAAGACAGCTCAACTTTATCCCAGAAAATAGTGGTGTGTGTTAATGTTGAAGTACAAATTACAGATAGAATGTCAACAATGATATGTAAACCATGTCTTGGTAAAGTTGACGAATGGTACGATTTTAAAAAATGTTGCGAAGATGTGCAAATTAAGTTACGCCAATGGGCTAATAGCCTAGGGGGTGATCGATTTATATTGGGAATAACAATTAAAGAAGAAATTATTGACACAGATGATACTGATATGTTAGTAGATACGTCTATGTGTATTAAAAGCGAACCACCTGATTCATTGTCGCCACACATGTCTGACGATGAAGAGCACGTCAATTATGAGTATGACGAAATGCCCACCTTGCTCCCCGCCGTAAATATCGAGCCAAACACCGACGATTTATTGATCCCAACCCTAGAATGTCCGGCTGCGGTGCATGGCATGAACGCCCCATTTTTCCTTAACCACCGAAAACCAATGAAACGCAATGAAATCGAGCACCCCGTTAAATTAAACCAAGAGAAACTTGACTCAATTTGTCGCGTTTGCGAAAAAACATTCAGCAGTTATTACAATAGAATTCGCCACGAAAGAACCGTTCACGCTCTAGATAAAGAACTGTCCATAACGGCGGTCAGATCCCTCCAGGATGAAGATCCGCTACTGGAATATCTGCCCGAAAATGGTGAAGATAATAATAGTGAAACTAGCAATGTTACCATCGAGCAATTCGCTGCGAGCTTACAGTTGATCCAAACGACGCAGATGGCGTTACCAAAACCTGAGATTTCCGAAAAAGAGTTTGTCAGATTTAATCGCAAAGTCGCAAATCAATTAGAGCGGCTGATATGTGATTGCTGTAATACACCGTATACATCGAAAGGTTTGATGGTCCATTTGCGGAAGAGTATGAATATACCGAATTTTTCTTGTTTTTGGTGTTGTATTTCGTTCCCGAACCGCTCACAATACATGCAGCACGCAAGTAAAAAGTATTGTAAACAACGAGCTCGTTTGGTCCAAAGTGGAGATTATCCCTTTAAAGCGTACCAACATTATCAATGTTCAGCATGCAAAGTTCTGTTTGTACACAAATTATTTTTATTAACACACATAACTAATATACATAATGGCAGAGAGTTTCCTATGACTTGTCCTATTTGTCGAGGCGTTTACGATACGAAAAACGATTATAAAGAGCACACGCAATCGAGCACTTGTTTTATTAAATTATATTGCAGTATTTGTGCAAATGTATTTGATAATCAAACCGAATTTGATAATCATTCCCAAATACACGATTTTGAACCAGAACAAGATCCACTTGCCGTTACGGTTAAAGAGAATATGGCAGAAACAAAAATTGAGATAAATAATAGTAAACCAGTTTATTGTCATATTTGCAATAAGAAATATGCATCTTACAGTGCTGTATTACTGCATATGACTGAATGTCATAAACATTACAAATTAAAACGATGCAAATTATGTCGAAGACGATTTATATTTAAAAGCGACCTACAAGTGCACATGATATCTGAGCACAACGACGAAGAAGTCGCATCCAATAATTTTTCGTGTGTGCAATGCGGCGCGCAATTCCCAACTTTAGAAAAATGGTGTGAGCACCAACAATCCCATACAGACTCAGTCCATCAATGTGAGGATTGTTCGAAAGTGTTTATCTCCGACGAAGAATTAAAAGATCATAAAACGACAGCGCATTCGAATATAAAATTGAAACTGTATCGCTGTTCTGATTCCAATTCATATAAAACTGTTTCGTCATTCGAAGACACCGAGGACGAAACAACTAAAATAGATGATCGCATTTTTAAATGCGACCAATGTCAACTTGCGTATAGAATTAGAGGTTCACTAGTGAAGCACAAGAAATTAAAACATGGGACTAGAGTAGTGACACGGGGCCGTCCTCCTAAATTAAAGAATAAATTCTCCTGTGGTTTTTGTAAAAAGAAATTCACTAATAACGTATCTTTGGTGCTACATAAACGGCATGTGCATCACAGAAATAACGGACAAATTATTGAAAATGACGACACAGATGATTCGAAAAGTGAATATCCGCATTCTTGTGACGTTTGTTTTAAATCGTTTCCAACTGTTAAAGGTTTGTCGATTCATGCGAAATCACATGCGACTTCTCCAGCAAAAATGACTGAAAATGCAGCTGATATAGCACCGTCAGCTAAAACTTCAATAAAAACATCTACAGTTAAATCTGCTACAATTAAAGCTTCTCCATTGAAAGCTGTTCCAATAAACATGGATGCCCCAATAAATATGCCTGCACCAAATAATGAAGAAGAAATAATTGAGCCTGTTGAAGAACGAACATGTGATATCTGTGAAGATGAATTTAGAACTATTGCAGAGTACCAAAAACATGCGAGAACGCATATCATAAGGAAAAAGAAGATGGCTAAAAGATGTGTAATTTGTAGAAACAAATATGTCCGCCTGGACAACCATATGCGTGTAAGTCACAACATGATAATTCTTCCAAAGAAATCACTTAAGAAGAAATCGCTTCCAAAAATTACACTTCCAAAAAAATCACTTCCAAAAAAATCACTTTCAAAAATACCAACTCATCTCACTTGTAAACACTGCTTTGCAACGTTTTCGTGCCCCAGTCTTTTGACCAGACATTTAAAAAAACATATGACGAATCCAGACTTGAGCAGCACTGTTTATAAATGCGAATTTTGTCCAAAAGTATGCGTAACTGCTCCTGGATTGGATGCCCATGTGAAAAGTGTGCACAGAAATGAAGCTACAACGGTTTATAAATGTGAATTTTGTACGAAAATATGCATGACAAAAGCTGGATTAGAATTACATACTACACGCATTCATAAACAGGACACAGAATATGAAAAACTAATAATTAAAAACGAAATAGTTGAGAATAAAGCGAGTCCTGAAGCAGTGCAAGAGAAAATGGTCGAAGTGAAAAAAGAACCAGGATTACCGGTGTCATACGATTGCAAGCATTGTGATAAAACGTTTAGCCGTCCCGGCCTTTGGCGAACTCATATGTTTAAAGATCATCCGACGATGAAAATGAGAAGATTCACTTGTAATCAGTGTAATAAAATTTTCCCTTCAGAACTATCGCTTTCGCGCCATATAAAATTATATCGAAACAGTAAAACACATACAAAACCAAAAAGAATTAAAAAACAAAATACTTCGTCGCAAATTAAACAACATACTTATGTACCTCAAATTAAGAAATCACAAAATAGTGTACTAGAACCAACTAAACCACAAACCGATGTAGTAAAATGTATACTGTGCAAAAAGAATTGCGCAAATGAGCAAATCTTAAAACGACATATGGCCTGGCACAATCGCCGTAATGGCGTCACCATACCGTGCACCATCTGTAACGAGTCGTTCAAAACAATGGATGCTTTAAATATGCATCATAGAACGAGCCACCGTGACGAGAAATGTAAATTTTGCAGCAAACCATTCACTAATCAAACTGCTCTAAAACAACACATTGCAACTAAACATGGCAAAAAATTAAAACTGGATAGTGATGCGACGATTACTAAAACCAAAAAATCGGTGACTAAAGTTAAGAAGAATGTTAGCAGCGACAATGCGAGTGCAAAGGCCGTACAGCCAGAACGGTTGTATTCTTGTACAGCTTGTAATATGAGGTTTTTAAATGCAGTTAAACTTAGGTTACATGTGACGAAAACTCATAATATGGCTTTATCAGAATAA
- Protein Sequence
- MDDITQQINNVCRLCLCEDENLVSIFEDSSTLSQKIVVCVNVEVQITDRMSTMICKPCLGKVDEWYDFKKCCEDVQIKLRQWANSLGGDRFILGITIKEEIIDTDDTDMLVDTSMCIKSEPPDSLSPHMSDDEEHVNYEYDEMPTLLPAVNIEPNTDDLLIPTLECPAAVHGMNAPFFLNHRKPMKRNEIEHPVKLNQEKLDSICRVCEKTFSSYYNRIRHERTVHALDKELSITAVRSLQDEDPLLEYLPENGEDNNSETSNVTIEQFAASLQLIQTTQMALPKPEISEKEFVRFNRKVANQLERLICDCCNTPYTSKGLMVHLRKSMNIPNFSCFWCCISFPNRSQYMQHASKKYCKQRARLVQSGDYPFKAYQHYQCSACKVLFVHKLFLLTHITNIHNGREFPMTCPICRGVYDTKNDYKEHTQSSTCFIKLYCSICANVFDNQTEFDNHSQIHDFEPEQDPLAVTVKENMAETKIEINNSKPVYCHICNKKYASYSAVLLHMTECHKHYKLKRCKLCRRRFIFKSDLQVHMISEHNDEEVASNNFSCVQCGAQFPTLEKWCEHQQSHTDSVHQCEDCSKVFISDEELKDHKTTAHSNIKLKLYRCSDSNSYKTVSSFEDTEDETTKIDDRIFKCDQCQLAYRIRGSLVKHKKLKHGTRVVTRGRPPKLKNKFSCGFCKKKFTNNVSLVLHKRHVHHRNNGQIIENDDTDDSKSEYPHSCDVCFKSFPTVKGLSIHAKSHATSPAKMTENAADIAPSAKTSIKTSTVKSATIKASPLKAVPINMDAPINMPAPNNEEEIIEPVEERTCDICEDEFRTIAEYQKHARTHIIRKKKMAKRCVICRNKYVRLDNHMRVSHNMIILPKKSLKKKSLPKITLPKKSLPKKSLSKIPTHLTCKHCFATFSCPSLLTRHLKKHMTNPDLSSTVYKCEFCPKVCVTAPGLDAHVKSVHRNEATTVYKCEFCTKICMTKAGLELHTTRIHKQDTEYEKLIIKNEIVENKASPEAVQEKMVEVKKEPGLPVSYDCKHCDKTFSRPGLWRTHMFKDHPTMKMRRFTCNQCNKIFPSELSLSRHIKLYRNSKTHTKPKRIKKQNTSSQIKQHTYVPQIKKSQNSVLEPTKPQTDVVKCILCKKNCANEQILKRHMAWHNRRNGVTIPCTICNESFKTMDALNMHHRTSHRDEKCKFCSKPFTNQTALKQHIATKHGKKLKLDSDATITKTKKSVTKVKKNVSSDNASAKAVQPERLYSCTACNMRFLNAVKLRLHVTKTHNMALSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -