Lspi019329.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000674.1:53956-56268[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9e-06 0.00024 21.8 1.3 2 23 417 438 416 438 0.98 2 13 0.014 1.2 10.2 1.3 1 23 438 459 438 459 0.98 3 13 0.0089 0.75 10.8 2.4 1 23 465 487 465 487 0.98 4 13 0.0012 0.1 13.5 0.8 1 23 493 515 493 515 0.97 5 13 0.00025 0.021 15.6 4.1 1 23 521 543 521 543 0.98 6 13 0.00015 0.012 16.4 1.6 1 23 549 571 549 571 0.99 7 13 0.0085 0.71 10.9 4.7 1 23 577 599 577 599 0.98 8 13 8.5e-05 0.0071 17.1 0.9 1 23 604 626 604 626 0.98 9 13 0.00013 0.011 16.5 0.7 1 23 632 655 632 655 0.96 10 13 2.1e-05 0.0017 19.1 1.4 2 23 661 682 660 682 0.97 11 13 1.1e-05 0.0009 20.0 2.1 1 23 687 709 687 709 0.98 12 13 3.7e-06 0.00031 21.4 1.2 1 23 715 737 715 737 0.98 13 13 0.0032 0.27 12.2 3.2 1 23 743 766 743 766 0.96
Sequence Information
- Coding Sequence
- ATGCGTAAGCACACCCGTGAAATTAAGCAGTCTAATAGCGAAGATCAATCAAGTAGCGCAATACCTCAAAATGTTGAACACTCGAATAATGTGGTTCATCAAAATATACCATCAGAAAACTGCCAAAATGAACGGCCAATGCTGAGTAACACGCATGAAAGTATATTATCGAATACTCATATTAAAGAAAATATACAATCTAATGTTGATGCTAAATGTAATAATATATTACTAACAAAAACCCTGGACTACCAACGCGAACCATTAAACAATGTAGCATATCAGAGTGAAAGATCAAATACTGAAGAATATCCATGTGTTCGATCAGAGATAAATGACAGTCAAAATATACTATGTCACAATCCGGACAGGCAATTGTTAAGGTTACGAAAGCGAATTCCTCGAGCTCAATATGTTGAATACAACGATGAAAACTGTCAAAGTGAAACATCAAATAGTGACCAGTGTCAGGGTGCATCATCAAACTATACAGACACTGAAACTGAATCATCAAATGATGAAGAATATGAAATGGAAAAAGCAACTAATGACAAAGAAACTACACGATCTTTTAATGTGAAAGATCAAACTGAACAGTCAAATCATCAAACACACTCTAAAACTGAGTTATCAATTAATATGGATCATGTAACCGCAGAAAATGATAAGCAAAGTGATTGTCAAAGTAAACGAATAAATAGTAGGAACTATTTAAGTGAATCATCCAATATGAAACAATGTCAAAATAATCGATTAAATACAGCAGTCTGCCGAAGTGAACTCATAAGTATTGCGAGTTGTCACAATTTATCAACAACTGGAGAGTGTCAAGATAAAGTATTAAATATTGAGCACTGTCAAAGGGAAGTATTGAGTAATATAGATTTTCAAGATAATTTTTTAAAAGCAAAAAATAAGCAAAGTAATGTATCAAATAAAGGGATCTCTCAATGTGAAATTACAAATAATACGGACTGTCAAAGTGAACCATCACATAATGAAAGCGTTCAAAGTAATCGTATAAATACAGGGGACAGTAAGAATAACCTATTGAATATAGACTACAAAGAAAAACTATTAAACAATGAAGATAATCAACGTAACCAATCGATCATTAAGGAAATTGAACCACCGTATAAAGAAATCGGTCAAATAATAGGATCAAATTCAGACAACTGTCCACGTGAGCTAACAAGGAATGCAAACTGCACAAATAAAAATAAACTATTGAAACCGTCTCGAAAAATAAAGTGTACAATTTGCGAAACAAAGTTTAAATCGCTCTCTGCCTTAAGTAAACATATGCAAACGCACAAATGCCAAGTTTGCGCTCACCCATTCCGTGTAGCCGATTTAAAAGAACACATGAAAGTGCACACTGGGGAGAATCCATTCTCATGTTCAATTTGTGGGAAAATATGTTTCTCACTTAAGCGTATTAGAATCCATATGCAATCACATGATGACAATAAACCATATTCATGTACGAAATGTGATCTTAAATTTTCCAAAGAGATATATCTATATGCACATGGAAAGGTGCATATAGATTTAAAAAGACATAAATGTAAAGTCTGCAGTCGATTATTCCGTAAAGTTTCTACCTTGAGAAATCATATGAAGGTACATTCGAACGAAAAACCATATTCCTGTTCAATTTGTAAGAGTTCATTTGCGAATAAAGACTATCGTGAGACTCATATGCAAACTCATAACAATAAAACAGGGTTTCCTTGTCCGATCTGCAACCATTTCTGTAATACTAAAAAGCAGCAAACGAAGCACTTGCTTGTACATTCTGGCGAAGGATTTATTTGTTCCCAGTGTGGCATGAAACTTAAAACTTCAATGACTCTACAAAGTCATATGCTAACGCATTCCAAAGAAAAATTATTTGCTTGCACGATATGTGATCGTTCATTGAAGTCACAGAAAGGCTTACACAGCCACATAAATATCGTGCATTCCAAAAACGTGGTTCAATGTGGTGTATGTGACCGATCATTTAAACATAAATATTTTTTATATCAGCATATGGCAATTCATTCTGAGAAAAAACATCAATGTTCACTTTGCGATAAATCATTTCGGATGTTAGCTAGTCTCCAGGTACATACCCGATCGCATACCAATGAAAGACCGTTCCCATGTTCCGTTTGCGCCAAATCTTACAAATCAACGAATAATTTAAAACTTCATATGCGGACTCATAATGATGAAAGACCATACCCATGTTCACTTTGTGATCTCAAGTTTAAAATTAAACATCATTTAGTAGCTCATACTGAGAGGAAACATCCAACGAAGGAGTAG
- Protein Sequence
- MRKHTREIKQSNSEDQSSSAIPQNVEHSNNVVHQNIPSENCQNERPMLSNTHESILSNTHIKENIQSNVDAKCNNILLTKTLDYQREPLNNVAYQSERSNTEEYPCVRSEINDSQNILCHNPDRQLLRLRKRIPRAQYVEYNDENCQSETSNSDQCQGASSNYTDTETESSNDEEYEMEKATNDKETTRSFNVKDQTEQSNHQTHSKTELSINMDHVTAENDKQSDCQSKRINSRNYLSESSNMKQCQNNRLNTAVCRSELISIASCHNLSTTGECQDKVLNIEHCQREVLSNIDFQDNFLKAKNKQSNVSNKGISQCEITNNTDCQSEPSHNESVQSNRINTGDSKNNLLNIDYKEKLLNNEDNQRNQSIIKEIEPPYKEIGQIIGSNSDNCPRELTRNANCTNKNKLLKPSRKIKCTICETKFKSLSALSKHMQTHKCQVCAHPFRVADLKEHMKVHTGENPFSCSICGKICFSLKRIRIHMQSHDDNKPYSCTKCDLKFSKEIYLYAHGKVHIDLKRHKCKVCSRLFRKVSTLRNHMKVHSNEKPYSCSICKSSFANKDYRETHMQTHNNKTGFPCPICNHFCNTKKQQTKHLLVHSGEGFICSQCGMKLKTSMTLQSHMLTHSKEKLFACTICDRSLKSQKGLHSHINIVHSKNVVQCGVCDRSFKHKYFLYQHMAIHSEKKHQCSLCDKSFRMLASLQVHTRSHTNERPFPCSVCAKSYKSTNNLKLHMRTHNDERPYPCSLCDLKFKIKHHLVAHTERKHPTKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -