Lspi012055.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000279.1:660928-663262[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0015 0.13 13.2 1.6 1 23 151 173 151 173 0.98 2 16 0.0017 0.14 13.1 0.6 1 20 178 197 178 200 0.94 3 16 9.3e-06 0.00077 20.2 2.8 1 23 220 243 220 243 0.97 4 16 0.00085 0.071 14.0 3.1 2 23 268 290 267 290 0.96 5 16 2.9 2.4e+02 2.9 1.0 2 23 302 323 301 323 0.95 6 16 0.0012 0.097 13.6 1.3 1 23 336 358 336 358 0.99 7 16 0.0076 0.64 11.0 1.2 1 20 371 390 371 393 0.94 8 16 4e-06 0.00034 21.3 0.1 1 23 414 438 414 438 0.96 9 16 0.12 9.7 7.3 1.4 2 23 445 467 444 467 0.95 10 16 0.004 0.33 11.9 4.7 1 23 473 495 473 495 0.98 11 16 2.5e-05 0.0021 18.8 0.3 1 23 501 523 501 523 0.98 12 16 3.6e-05 0.003 18.3 0.5 1 23 529 551 529 551 0.98 13 16 0.00086 0.072 14.0 2.6 1 23 557 579 557 579 0.98 14 16 0.00048 0.04 14.8 0.8 1 23 585 607 585 607 0.98 15 16 1.1e-07 9.5e-06 26.2 1.6 1 23 613 635 613 635 0.97 16 16 4.7e-06 0.0004 21.1 0.9 1 23 641 663 641 663 0.98
Sequence Information
- Coding Sequence
- ATGGATGAAACTGGGGCAGAACAGTGTCGCGCCTGCCTTATTAGGCCCGTAGAAATGGTTTCTTTGGCCGCAGACCACGTTGTGTGTGATAAAGTGATGTCTGTGTTGGAGTTAATTCGTAATTGTGCTTCTGTCGAGATCGAGTTAGACGACGGTTTTCCGCAGTTTGTTTGCGTCGATTGTATTCATTTGGCGGAGAAATCGTTCGAATTTCGTGTTCAGTGCAAAGACGCCGATGAAACGTTGCGCTCTGGACCAGTTGTCGAATTCGATGTGCTACAATTTGAAGGTGAGGATGTTGTTTGTGAGGAAGTTGAGCCGGAAAGTGTTAAGTTTGAGGAACATTTGGACCAAAATGAGGAAGAAGAAGAAGAACAAGAAGATGAAGAAGAAGAAGCTCAATTAATTAAATGTGAACAAATCGAGGAGGAAGAAGAAGAGGAAGAAGTTTTTACGTGTTTAGTGTGCAACTGTACTTTCCCGTCTGATAACGCATTGATTAAACATCGTAATTCGCATCCGCCCAATTTTTACCAGTGCCCCCATTGCCCTGTAAGATTCATCTCTGAGGAACTTCTAGACCGACACAAATGGAAACATTCTATAAAAGTTGCGCCTGCTCCGAACGCTAACACTAAGCGTCGCTTAACAATTAGTTTTATTTGCTCAGATTGTGGCAAAAAATTCAATTCATTAGCGCAACTCCATACACATACACGAAAAAATCACACCCTCGTCAAAAACCCATACAATCACACTTCTGATCATTCCCCTACACCAAATCCCACTTCTGATTTACTCAAATGCCACATATGCGACAGCCTATTTCACACCCAACAAAACCTCGAAAGCCACATGCAATCTGTACACATATTAACTAACAAAACCGAGCAGCAGCGTATACAATGTAAATTTTGTTGTAAAACACTTCCAAGCGCCACAGCGATGCGTTTACATGTTCAATGGCACGAAAAACGGAAAAACACGACATCGAACCACATCGCTTATAAATGTAAATTGTGTGATAACGATTTTAAAACGTTGACTGATATCAAAGATCATTTATCGACACACTTAATCGATATGAAATCATTATTTCAACATTTATTATATAAGTGTACAGAGTGTACGAACACGTTTCCGACTATATACGAGTTTTTCCGTCATACACCAATTCATACTGAAGTTAAAATAGAGAATACGAAAGCTGGCGCGACGCGCATCGTAAAAAACCGTCCGTATACATGTTTAGTGACGGGTTGCGATAAATCGTTTCCTAGTCCGAGCGCCTTAACAAATCACGGTCGGACCCACCAATCCGCTTGGCCTAAACGGTGCCGTTATTGCCCCGAAATATTGCAAAAATGGCACGATTACATGCGGCATTTAAACGAAtcgcacgcagatcaaaaaacatttgtttgtgcgcaatgcggcaaaaagttttttaaagaacggaatttaacgtgccaccaaaaaacgcatacaggcgaacgcaactacatgtgcgattattgcggctttagtttccaagcgcaaaacaatttagtggctcaccgccggatacacacgggggtgaagccctataaatgcaccttgtgccccatggcgttcccccaacacgccggattacgttcgcatatgttaaaccacagcggggaaaagaaacatgaatgttctgtgtgtaataaaaagtttttgcgacccggagcccttgcgacccaccacaaaacgcatacaggggtcaaagattacgcgtgccatatatgcggcgcccgttttggggcctcatcgacgcgaaagaaacatatattgacgcatacaggggaacggaatcatgtttgtgacttttgcggcaaggcgttcagccgtagctcgaatttaaatgtgcaccgcaaaatacatacgggggaaacgccgcatgtttgcggcatttgcggcaaagggtttatacaggcgcatgtgttacgttcgcatatgaatacgcataggcgcggtagagacagtttgAAAAAGGGCGCGAAAACGGAGAAACGCTCGATTGAAGATGGCGAGCCTGAAGAGTTAACTGTATTAGCGGATTTACCCGTTAAATTTATTACCGAAATTAACTGA
- Protein Sequence
- MDETGAEQCRACLIRPVEMVSLAADHVVCDKVMSVLELIRNCASVEIELDDGFPQFVCVDCIHLAEKSFEFRVQCKDADETLRSGPVVEFDVLQFEGEDVVCEEVEPESVKFEEHLDQNEEEEEEQEDEEEEAQLIKCEQIEEEEEEEEVFTCLVCNCTFPSDNALIKHRNSHPPNFYQCPHCPVRFISEELLDRHKWKHSIKVAPAPNANTKRRLTISFICSDCGKKFNSLAQLHTHTRKNHTLVKNPYNHTSDHSPTPNPTSDLLKCHICDSLFHTQQNLESHMQSVHILTNKTEQQRIQCKFCCKTLPSATAMRLHVQWHEKRKNTTSNHIAYKCKLCDNDFKTLTDIKDHLSTHLIDMKSLFQHLLYKCTECTNTFPTIYEFFRHTPIHTEVKIENTKAGATRIVKNRPYTCLVTGCDKSFPSPSALTNHGRTHQSAWPKRCRYCPEILQKWHDYMRHLNESHADQKTFVCAQCGKKFFKERNLTCHQKTHTGERNYMCDYCGFSFQAQNNLVAHRRIHTGVKPYKCTLCPMAFPQHAGLRSHMLNHSGEKKHECSVCNKKFLRPGALATHHKTHTGVKDYACHICGARFGASSTRKKHILTHTGERNHVCDFCGKAFSRSSNLNVHRKIHTGETPHVCGICGKGFIQAHVLRSHMNTHRRGRDSLKKGAKTEKRSIEDGEPEELTVLADLPVKFITEIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -