Lspi022220.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010001374.1:23319-25901[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7e-05 0.0014 19.3 2.2 2 23 189 211 188 211 0.95 2 15 1.4e-06 0.00012 22.8 0.9 2 23 217 238 217 238 0.97 3 15 0.00018 0.015 16.1 3.6 1 23 244 266 244 266 0.98 4 15 0.0025 0.21 12.5 2.6 1 23 527 549 527 549 0.98 5 15 5.4e-06 0.00045 20.9 1.2 1 23 555 577 555 577 0.98 6 15 0.16 13 6.8 6.0 1 23 583 605 583 605 0.98 7 15 0.00032 0.027 15.3 1.2 1 23 611 633 611 633 0.98 8 15 6.3e-05 0.0053 17.5 1.9 1 23 640 662 640 662 0.98 9 15 4.3e-06 0.00036 21.2 0.4 1 23 668 690 668 690 0.97 10 15 1.6e-05 0.0013 19.4 1.2 3 23 697 717 695 717 0.96 11 15 2e-05 0.0017 19.1 0.6 1 23 723 746 723 746 0.97 12 15 0.0025 0.21 12.5 3.9 2 23 753 774 752 774 0.97 13 15 1.1e-05 0.00089 20.0 3.5 1 23 780 802 780 802 0.98 14 15 2.1e-07 1.8e-05 25.3 3.9 1 23 808 830 808 830 0.99 15 15 0.00055 0.046 14.6 3.6 1 23 836 859 836 859 0.97
Sequence Information
- Coding Sequence
- ATGCCTTCACAAATATGCCACGATTGCGTCCGTGGCTTATACCAATCCTACGAATTTGCAATAAAATGCAAGGAATCAGACGAGAAACTGCAGCTATATTTGAAAAATAAGTACAATCAAGAAATAAAACATGAAGTTGATTACGATTCCAATTCTATTCAACTTTTGCCTGAAGATAACGAAAATAATGAACCAATCGACTCGCCCACGTCTACTGGAATACGAAATAATGACTCATCAATAGAAACATGTATGCCACATAACTTATTCAATTCTTTCGTATTGTTAGAGAGATGCGATGAATCAGAATTGAGAAACCTGGCTCTACTAAATAGTGAAGCAATACCAAAATATAAAAGAATTGAAGAAAACTCGGTGAATACTAATAGTTTGCAAATTGTAAATAACACAAATCCAATTGATAATGCATCATCCAAAGAAACATGTATACCTCCTAATTGTTTCGTATTGTTAGAGAGATGTAATGAATCAGAATTAATAAATATGGTTCTTCCAAATAGTAAAGCAATACCAAATGATCAAAAAAGCACCGACATTAAACTAGAATGTACAATTTGTGAGATTTTTTTTACTAGTAATGATCACTTTAAACGCCATATGAAATACGTTCATGAAAGAAAGAAACCAACATGTACGATTTGTGGGAAATTTTTCAACAGTAAATTTGATCTGTCACGTCATATGATTGTACATGTACAGCAAAGTTTATACTCATGTAATATTTGCGGGGAACATTTTAAAGAAGAATGTAATTTTAGCGCTCATATGCTTAAGCACAACACCGAAGAACAATCTAGCAATGAGGAACATCAAGATGATGTGGTTCTTCAAAATAAGCTATCAAACGCTGACGATTGTCAAAATGATCGCTTGATCTTTGAACCATCGAATATTGATATTAAAGATTTTTTACAAATAAATATAGATGCAAATAGTAGCATATCAGATAATATATTATTAAATAATGTATGTAATACAAGCGAAAGTGATAGATCAAATATAGAAGAATGTGAAAGTGTTCGATCAGCGAATATAGACAGTCAAAATCCATCTAACTGTAAAATGTATGGAATACGAAAACGAAATCTTCGGGCCCAATTATATGTCAAATACAACGATGAAAGCTGTCGAAGTGAAACATCAAATAGTGATCAGTGTCAGAGCGCATTATCAAACTATACAGACTTTGAAAGTGAATCATCAAATGATGAAGATTATGAAGATTATCAAAATGAATATCCATTCGTAGACAATTGTAATAGTAATGCATCAAATAATGAGATCTCTCAATGTAAACGTACAAATATTATAGACTGTCCAAGCGAACCATCAACAATTGAATATGTTCAATGTAATCAAATAAAAACGGAGGACACACAAAATGAACTATTAAGAAATATAGACTACAATACTGAAGATAATGAACGTAACCAATCGAACGATGATATCAAAATTGAACCACCATGTAATGAGAACGGTCAAACAGAAGGATCAAATACTGATAACTGCGAACGTGAGCAACAAAGCAAAGAAACGCACACCAATACCAAAAAACGTCACAAATGTCTTGTTTGCGCGCATCCATTCCGTAAACTCACCGATTTAACCGAACACATGAAAGTACACAATGGAAAAAATCCGTTCACATGCTCATTTTGTGGAAAAATATTTTTCTCACCACAGACTCTAAGAATCCATATGCAATCACATGATGACGATAAACCATACTCATGTACGAAATGTGATCTTAAATTTTCCTGTAAACAATATTTACATGCACATGAAAAGGTGCATATGGATGAAAAAAGACATAAATGTGAAGTCTGCAGTCGTTTATTCCGCAAAGCTGCTAACATGAGAATACATATAAAGATACATTCGGGTAAAAAAACAACATATTCCTGTTCAATATGTGAAAAATCATTCTTTAAAAAATCTAATTATGATGATCATATGTATATTCATAACACTAAAACAGAGTTTCCTTGTCCGATTTGCAACCGTTCTTTTAAAACTAAAGCACAGGTAACGACGCACTTGTACGTGCATTCTGGCGAAGATTCTATTTGTTCTGTTTGTGGCAAGAAATTCGCGTCTAAACAACATTTAAACGCGCATTTTGCAACGCATGCCGTAGAAAAATTATTTGCTTGCAAGATATGTGGTAATTCATATAAATCACAGCGAAACTTAGGGAACCATTTGAGAAGGGTGCATCCTAAAGGAGAGCTTGTTACATGTGCTATATGTAAGCGGTCATTTAAACATATTGAAATATTACATAAACATATGCGAACACATTCTGCGGAGAAACCACATCAATGTACATTCTGCGATAAATCGTTTCGATTAACTGAAAGTCTCAAGATACACATACGAACGCATACCAATGAAAGGCCGTATTCATGTAAAGTTTGCACTAAACCATTCAAATCACAGTCAAATTTACATCTTCATATGCGGACTCACAATGATGAAAGACGATATCCATGTGAACTTTGTGATTTTAAGTTTAAAATTAAACACCATTTAACAGCGCATATTGAGAGGAAGCATCCATAA
- Protein Sequence
- MPSQICHDCVRGLYQSYEFAIKCKESDEKLQLYLKNKYNQEIKHEVDYDSNSIQLLPEDNENNEPIDSPTSTGIRNNDSSIETCMPHNLFNSFVLLERCDESELRNLALLNSEAIPKYKRIEENSVNTNSLQIVNNTNPIDNASSKETCIPPNCFVLLERCNESELINMVLPNSKAIPNDQKSTDIKLECTICEIFFTSNDHFKRHMKYVHERKKPTCTICGKFFNSKFDLSRHMIVHVQQSLYSCNICGEHFKEECNFSAHMLKHNTEEQSSNEEHQDDVVLQNKLSNADDCQNDRLIFEPSNIDIKDFLQINIDANSSISDNILLNNVCNTSESDRSNIEECESVRSANIDSQNPSNCKMYGIRKRNLRAQLYVKYNDESCRSETSNSDQCQSALSNYTDFESESSNDEDYEDYQNEYPFVDNCNSNASNNEISQCKRTNIIDCPSEPSTIEYVQCNQIKTEDTQNELLRNIDYNTEDNERNQSNDDIKIEPPCNENGQTEGSNTDNCEREQQSKETHTNTKKRHKCLVCAHPFRKLTDLTEHMKVHNGKNPFTCSFCGKIFFSPQTLRIHMQSHDDDKPYSCTKCDLKFSCKQYLHAHEKVHMDEKRHKCEVCSRLFRKAANMRIHIKIHSGKKTTYSCSICEKSFFKKSNYDDHMYIHNTKTEFPCPICNRSFKTKAQVTTHLYVHSGEDSICSVCGKKFASKQHLNAHFATHAVEKLFACKICGNSYKSQRNLGNHLRRVHPKGELVTCAICKRSFKHIEILHKHMRTHSAEKPHQCTFCDKSFRLTESLKIHIRTHTNERPYSCKVCTKPFKSQSNLHLHMRTHNDERRYPCELCDFKFKIKHHLTAHIERKHP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -