Lspi005474.2
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000092.1:20882-29103[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00013 0.011 16.6 0.2 2 21 175 194 174 195 0.93 2 13 0.001 0.084 13.8 0.3 1 23 230 253 230 253 0.97 3 13 0.00013 0.011 16.6 2.4 2 23 258 279 257 279 0.97 4 13 0.00027 0.022 15.6 3.9 1 20 284 303 284 305 0.94 5 13 1.4e-07 1.1e-05 25.9 0.7 1 23 316 338 316 338 0.98 6 13 1.2e-05 0.001 19.8 0.3 1 23 348 370 348 370 0.99 7 13 0.00027 0.022 15.6 2.2 1 23 376 398 376 398 0.97 8 13 3.5e-05 0.0029 18.4 0.7 1 23 404 426 404 426 0.99 9 13 1.1e-05 0.00092 19.9 3.5 1 23 432 454 432 454 0.95 10 13 4.1e-05 0.0034 18.2 1.0 1 23 460 483 460 483 0.94 11 13 1.1e-05 0.00095 19.9 0.4 1 23 489 511 489 511 0.93 12 13 2e-06 0.00017 22.3 4.1 1 23 517 539 517 539 0.98 13 13 4.3e-07 3.6e-05 24.4 1.8 2 23 546 568 546 568 0.97
Sequence Information
- Coding Sequence
- ATGGAGATGTCTGAGGCAAGCGAAGGGCCGTTCATAAAAATTGAGCCTAAGGCTCAGGCGGAGCCTATGGTGACCCTAAAAGTTGAACCTAGTGATAGTGCAGGTCCGTCGGTTCATACGACTCTATTAACAAATATGCCCTTAGAGCAAACATTAAATTTACAAAATGCGTTAGTAATAATGCCTGGAAACTCGGATGGAAACCTGGAAATCAACAAAATTCACCACAACAACGTAATTGTCTTGGCCAGCATGACGCATACTGGAGAACTAATCACGCCGGATAATATGGAAGTTGAGGAATCGGAACTGGAACCAGAAGAATTGGGCCAAGATGATGAAGGGGAATTGGATACAGAAGTGGAAGAGGAGATGGATGATGTTGAAGAATTGGAACCGGATGATGATACAACAGAAGAGCAATTGGATGAAGAGGAGGAGGAGGATGAAGACGAGGAGGAACCGGAAACGGAGGAAGTTGTTGAAAAGAAGGAACCGAAACCAGCTCCAGTTGATCCGCTTACTTGTTTGACTTGCGAAAAGGTTTTCAAATCACAGACCGGTCTAAAACGGCATCTGCTGATCTGCCAACCGGAGCCTGTGGACGATGATCAGGACGACCCGTTGGCGTTTGAGATTTGCTATTGTTGCGGCGAACCGTTGGACACGGCGCATAAAGTGGGCGATTTTCAGTGTCCCAAGTGCGAGAAACTGTTCATATCGGAGTCGGCGAAAGAGCGGCACAATCGTATCGTCCACTGCGACGGCCTGAAATGCCCCGACTGCGACAAACTGTGTCAATCGCGCAAACATCTCGAGGCGCACATAATCACACATATTGAGAAACCGTTCTCGTGTATGCGATGCCATAAGACGTTCACGCGCAAATATCATTTAGATCGGCATGTTTTGCAGACCGGATGCGATGGAAAACCGCGCCAAACCTACCAATGCCAGGTTTGCGATAAAACATTTGGGCGTCGCGACAATTTACGCGACCACCTGCGCGCACACGCGGGCCAAGTCAAGCGCAAAAAGAGCTTTCAATGCGAAGAATGCCAAAAGGAGTTCCACGGGGCGGCCCTATTGGCCATTCATATGAGAACCCACACAGGAGAACGGCCGTTCGAGTGTACGATGTGCCCAAAGCGTTTCCCATCCAGTGGGGCAATGAAAAAACATTGCCGAATGCACACAGGCGAACGCCCGTACCAATGTACACAGTGTTCGGCTCGTTTTGCGGCCAAGGAGACGTTAAATCGTCACGTGCGCACCCACACCGGAAACAAGCCTCATTCCTGTCAATTTTGCGGCAAAAGTTTCATCCAAGCGTCTCAGTTGCGCGCGCACATATTCCATCACACCGGTGAAAACGGATTTCCGTGCGATCATTGCGGCAAAGCGTTTAATCGCAGGGCTCGTTTGGTCACCCATGTGAAGTTTGTGCACGAGGGGGCGAAGCCCTTCGAGTGCGACACGTGCAAGAAGACGTTTGTGCGCAAAGAGGATTTGGCCAGACATGCGGTTCTACACAGCGGATTAAAACCGCACGAGTGTCCAGTTTGTAACAAGTGTTTCGCGATGAAGTCCTCGCTGAAAACACATTTAAACACGCACCGCAAAGAGCAGCCGCGCAGCTGCGACGAGTGCGGCCGCGCGTTCATCCGGCAAGACTGCCTGATTCGGCACATGCGCACTAAGCACCGCGACATGCTCGAAGACATCATGGCCGGTGCCGAAAAGAAGCGATTGCAGCAACAACTACTAGCGGCCGCGTCCGAGGCAGTCGGCGAATCGAAACCAAGTATCGCCGAGTCCGGCGTTTGGTCCGAACTTACATTAACGGATTCAATCAAGGAATTGCTCACACTTCTCGTCGATGAAGCAACACTAATGGCGTTTGGATGGCCGGATACTCCGGTCGATAAACTATTGGATTCGGTTATTAGGCGATGCGGGCATAAACCGGCGTCGGAAGACGATTTCGATTATATCGGACGGTTGCGGGAGAACGCAAAGTTATTATTTACGGTAGTTATCGATGATTCGGCCGTTAAGTCGTTGCTCAACAACCAAACGGTGGATGAAGTTATTTTGCACGTTTTGCGCCTTGCCAAAACCGAATAA
- Protein Sequence
- MEMSEASEGPFIKIEPKAQAEPMVTLKVEPSDSAGPSVHTTLLTNMPLEQTLNLQNALVIMPGNSDGNLEINKIHHNNVIVLASMTHTGELITPDNMEVEESELEPEELGQDDEGELDTEVEEEMDDVEELEPDDDTTEEQLDEEEEEDEDEEEPETEEVVEKKEPKPAPVDPLTCLTCEKVFKSQTGLKRHLLICQPEPVDDDQDDPLAFEICYCCGEPLDTAHKVGDFQCPKCEKLFISESAKERHNRIVHCDGLKCPDCDKLCQSRKHLEAHIITHIEKPFSCMRCHKTFTRKYHLDRHVLQTGCDGKPRQTYQCQVCDKTFGRRDNLRDHLRAHAGQVKRKKSFQCEECQKEFHGAALLAIHMRTHTGERPFECTMCPKRFPSSGAMKKHCRMHTGERPYQCTQCSARFAAKETLNRHVRTHTGNKPHSCQFCGKSFIQASQLRAHIFHHTGENGFPCDHCGKAFNRRARLVTHVKFVHEGAKPFECDTCKKTFVRKEDLARHAVLHSGLKPHECPVCNKCFAMKSSLKTHLNTHRKEQPRSCDECGRAFIRQDCLIRHMRTKHRDMLEDIMAGAEKKRLQQQLLAAASEAVGESKPSIAESGVWSELTLTDSIKELLTLLVDEATLMAFGWPDTPVDKLLDSVIRRCGHKPASEDDFDYIGRLRENAKLLFTVVIDDSAVKSLLNNQTVDEVILHVLRLAKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040294; iTF_01039458; iTF_01041096;
- 90% Identity
- -
- 80% Identity
- -