Basic Information

Insect: Leistus spinibarbis
Gene Symbol: -
Assembly: GCA_933228875.1
Location: CAKOGB010000075.1:848739-851481[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0068 0.57 11.2 0.6 1 20 143 162 143 165 0.95

2 12 0.014 1.2 10.1 0.7 3 23 173 193 171 193 0.96

3 12 7.8e-07 6.6e-05 23.5 0.8 1 23 199 221 199 221 0.98

4 12 9.2e-05 0.0077 17.0 0.3 3 23 229 249 227 249 0.96

5 12 8.1e-07 6.8e-05 23.5 1.1 2 23 256 277 255 277 0.97

6 12 1.6e-06 0.00014 22.5 1.2 1 23 283 305 283 305 0.99

7 12 1.9e-06 0.00016 22.3 2.1 1 23 311 333 311 333 0.96

8 12 1.7e-07 1.5e-05 25.6 0.7 1 23 339 361 339 361 0.99

9 12 5.4e-07 4.5e-05 24.1 0.7 1 23 367 389 367 389 0.98

10 12 1.9e-06 0.00016 22.3 2.1 1 23 395 417 395 417 0.98

11 12 6.1e-07 5.1e-05 23.9 0.7 1 23 423 445 423 445 0.97

12 12 1.7e-05 0.0014 19.3 0.4 1 23 451 473 451 473 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0068	0.57	11.2	0.6	1	20	143	162	143	165	0.95
2	12	0.014	1.2	10.1	0.7	3	23	173	193	171	193	0.96
3	12	7.8e-07	6.6e-05	23.5	0.8	1	23	199	221	199	221	0.98
4	12	9.2e-05	0.0077	17.0	0.3	3	23	229	249	227	249	0.96
5	12	8.1e-07	6.8e-05	23.5	1.1	2	23	256	277	255	277	0.97
6	12	1.6e-06	0.00014	22.5	1.2	1	23	283	305	283	305	0.99
7	12	1.9e-06	0.00016	22.3	2.1	1	23	311	333	311	333	0.96
8	12	1.7e-07	1.5e-05	25.6	0.7	1	23	339	361	339	361	0.99
9	12	5.4e-07	4.5e-05	24.1	0.7	1	23	367	389	367	389	0.98
10	12	1.9e-06	0.00016	22.3	2.1	1	23	395	417	395	417	0.98
11	12	6.1e-07	5.1e-05	23.9	0.7	1	23	423	445	423	445	0.97
12	12	1.7e-05	0.0014	19.3	0.4	1	23	451	473	451	473	0.98

Sequence Information

Coding Sequence: ATGGAAGAAACAATAATATTGAATATAGATAAAATATGCCGGGCTTGTTTGTTAGAAAAACCTAAAATGCAAGAGTTATTTCATGAGCAAATATCTGAAATGTTCTCTTCGTGTACAACAGTTTTGGTATCTTCAAATGATGGATTACCACTTTTGTTATGTTCTGAATGTCTTGAGTTGACAAATCAATCGTATTTATTCAAACAACAAAGTTTAAAATCAGATGAAATATTGCGCCAATATTTATCGAATTTAAAAACACAGGAAACCGAATATAGCGATACAGAATTTGTAAAAACTGATTTACAATTGGAGAAAAATGATTTTCAACAAGAACCAACCAATGAATCACAATCGTGCGATGATTCAGATGTTAAACAAACAAAATCAGTTAAATCAAAGAAAAAACATTTTATAATTAGGAAATTTTCATGTAATGTGTGTAATGATGGCTTTGAATCGAATGAAGATTTAAATATACACATGATTTGCCATCCGACGGATGGCAAAATTATATGTTTAAtgtgccaaaaagaatttgcccatatcaaaattttaaggcgacacgttcggattcacatgactaataagccgttcaactgtgaggtttgcaataaaggcttctcagaatctggtagtttaacccgacatttacgcaaacataggggcgaaaagaggcatttatgtactgtttgcgggaaggggttttatgaagccaacgtcttagcggttcacatgcgaacacacacagGTGAAAAACCGATTGAATGTACTGAGTGTAATAAATGCTTTGCTGATCCAAATGGGTTGCGATCCCATATGAAATCTCACACAGGTGAAAAGAAATATGTTTGTGAGATTTGTAATAAGCCGTTTGGACATTCATTTGTTTTGAAAAAACATATGAGGGTACACAGCGGTGAAAGGCCTTATTTGTGTTCTGTTTGTGGGAAGTCGTTTACTCAGTCGCATTATGTTAATATTCACATGCGACAACATACAGgcgaactaccatacgtttgctctgtatgcagcaaaggtttcacgcagaacagtcaactagatatgcatatgcgaacccacacaggtttcaagccctacatatgtgcagtttgcggcaagcgctgtgcccgctccggcgatctccaaacgcatatgcggtcacataccggggaaaagccattttcgtgtactgtttgttcccggaaatacgtgacttctagccatttagccgtgcatatgcgcagccatacaggaatacggacacacatctgtgatgtgtgcgataaagggttcagggactcgcaaggacttaaggcacatttgagaacgcacacaggcgaaaagccgtatgtttgtggggtttgcggacataagtttgcacagtcaggGGCTTTGTCTACGCATCGAAAAATTCACACGGAAAAGAATAAATAG
Protein Sequence: MEETIILNIDKICRACLLEKPKMQELFHEQISEMFSSCTTVLVSSNDGLPLLLCSECLELTNQSYLFKQQSLKSDEILRQYLSNLKTQETEYSDTEFVKTDLQLEKNDFQQEPTNESQSCDDSDVKQTKSVKSKKKHFIIRKFSCNVCNDGFESNEDLNIHMICHPTDGKIICLMCQKEFAHIKILRRHVRIHMTNKPFNCEVCNKGFSESGSLTRHLRKHRGEKRHLCTVCGKGFYEANVLAVHMRTHTGEKPIECTECNKCFADPNGLRSHMKSHTGEKKYVCEICNKPFGHSFVLKKHMRVHSGERPYLCSVCGKSFTQSHYVNIHMRQHTGELPYVCSVCSKGFTQNSQLDMHMRTHTGFKPYICAVCGKRCARSGDLQTHMRSHTGEKPFSCTVCSRKYVTSSHLAVHMRSHTGIRTHICDVCDKGFRDSQGLKAHLRTHTGEKPYVCGVCGHKFAQSGALSTHRKIHTEKNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041093; iTF_01039457;
90% Identity: -
80% Identity: -