Lspi012030.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leistus spinibarbis
Gene Symbol
-
Assembly
GCA_933228875.1
Location
CAKOGB010000279.1:536967-542979[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 8.2e-06 0.00069 20.3 5.0 1 23 400 422 400 423 0.95
2 13 5e-08 4.2e-06 27.3 1.9 1 23 453 475 453 475 0.98
3 13 8e-06 0.00067 20.4 4.0 1 23 481 503 481 503 0.99
4 13 8.4e-06 0.00071 20.3 2.6 1 23 509 531 509 531 0.98
5 13 1.1e-06 9.3e-05 23.1 1.3 1 23 537 559 537 559 0.99
6 13 5.5e-06 0.00046 20.9 4.2 1 23 565 587 565 587 0.98
7 13 7.9e-05 0.0066 17.2 0.7 1 23 593 615 593 615 0.98
8 13 8.1e-06 0.00067 20.4 2.3 1 23 621 643 621 643 0.99
9 13 1.4e-05 0.0012 19.6 3.0 1 23 649 671 649 671 0.98
10 13 4.2e-06 0.00035 21.3 0.7 1 23 677 699 677 699 0.98
11 13 1.1e-06 9.2e-05 23.1 1.9 1 23 705 727 705 727 0.98
12 13 3.1e-05 0.0026 18.5 2.8 1 23 733 755 733 755 0.98
13 13 1.6e-05 0.0014 19.4 3.4 1 23 761 784 761 784 0.97

Sequence Information

Coding Sequence
ATGCCGAATACAGAAGAATTCGACTTAAATAATATATGTAGAACGTGTATGTCATCTAATAATTTGAAATCATTGTATGAAGAATCATCTTATGATCAAATGTTATTAATATGTACTACAGTTGTATGTTCTAAAAATGACGGGCTACCAGAACAAATGTGTAGTGATTGTATTCTCGAATTAAAACGTGCATCCGTTTTCGCAACGAAATGCCAAAAAACGGATAAAAAACTACGGATGTACATCCAAAAACAAGCAAACCCAAATATGGAACCAGATTGTTCTAATACTAAATTGGAACAAAGTTTAACTACAATAAAATCTTTAAGGGATCCGTTAGACATAAATGGAATTAAAATGGAACTCGATGAATTTGATGTGCATAAAGTGAAAATTGAAACCAATCCGGATATTAAATTTGAGCCACAAGATCCGTTTGAAATTCATCAAGTTTTGTTACCCGAAATCGAATATTACGAGGAATTTCATCAAAACAGCCAACTAGATTCGCCTACACGACTCGAAGCACCGGATGAACAAGGACAGAGTTTACCTATTTTCTATCGGCGAGATGTATATAAATATTTATCAGCTAATAAAAATGAGGAACCTGCTACCGTTCATTACATATTATCAGAGTTAGGATTATCGGCGAACTGTCCGAGTTATTATGTAACGGAATTATGTCAAAAAGTGCATATATTCCTTATGCAATATACTCAAAGATGGGATTCTTGTATCGGTATTAAAAGGTGGTTTGAGGAAAAAAATAGAGCTTGGTTGGACGCAATATTTGCGCTGCCAACATATCCAACCGTTGGCGAAACcgcagaaaaacgggagaaaccatatgcgtgtaccTATTATGAAAGCGATGGTCTACCAGTGCAAATTTGCATCGATTGCATCAATGAGTTAAATCGCTCATACACATTCGCATTAAAATGTCGCGATTCAGACACCAAATTGCGTAATTATATGCAAAAACTTGTACCTGAAGAGTACGCAATACCACACGGCTCTAATATAAATTATGAACATAGTTCTCAAATGGAAAAACCACTAGATATTTATGAAGCTCAAATCAAATTTGAACCAAATGACACCATTAAAGTAGAAACTATTACTGAACCAGAACTAGATATTCCAGACGTGCCGATCCTACTAGAACTAAATCCAGATCAACGTGGCCTTGGCTACGAGTGCAACATTTGCCAAAAAAGATTCAAGCAAGCATCATTATTACTTCGACACCAGCACCAGCATCATGCCGACCTAAAGGTCATTGAACTCGTCAACGAATCGTCTGCACACAGTGACACTAGTGTAACAGATCCAACGAAAACGgaaaagccattttcatgtaaactctgtgacactacattcacgcgaaaggacaatttaatcattcacatgcgaaaacacaccggagagaagccatattcctgtacagtatgtggcaactcgttcaataaactatgcaatttaaatcgacatcagcgaactcacaccggcgagaagccatattcatgtaccatatgccaaaacacatttaaagagcaaggacatttaaaaatgcatatgcgcatccatacaaaagagaagccgtattcgtgtacattttgtgagatttcattcagtcggtccatagatttaactcgtcacctccgtacacatactggagaaaaaccatattcatgtccgatttgcagtactgcgttcaaccagcaacaacatttaaagagtcacatgcacacacataataaagagaaattattttcgtgtacagtttgcgttgctgcgtacagtcacccgcagagtttagagcagcatatgcgaaagcatactggcgagaagttatattcgtgtaccacttgtaatagaacgtttgtttggaaaacggatttaacacggcatatgcgtacgcatacaggagaaaaaccatatacgtgttcagtgtgcaaaaaagcgtttaagcagcagcaacacttacagtatcatgcgcagattcatacgagaaacaatcgatattcgtgtaaaatttgcgatcagtcatttgatgttaaatcggatttaatgattcataaacaaacgcatacggaactgaaagagttttcatgcagcgactgcgatacttcctattttacgaaagttgagttaaatcgacatatgcggcgacatgcagaagtcaaagacttttgttgtaatatttgtagtaattcgtttattttaaaatcggatttaacgcggcacatgttgacgcacggtgaagaaaaaccatattcgtgtACGGAATGTGGCAGCTCTTTCAAAACGTATAATCATTTAACTAATCATATTATGAAAACGCACGCAGAAACTCACTAA
Protein Sequence
MPNTEEFDLNNICRTCMSSNNLKSLYEESSYDQMLLICTTVVCSKNDGLPEQMCSDCILELKRASVFATKCQKTDKKLRMYIQKQANPNMEPDCSNTKLEQSLTTIKSLRDPLDINGIKMELDEFDVHKVKIETNPDIKFEPQDPFEIHQVLLPEIEYYEEFHQNSQLDSPTRLEAPDEQGQSLPIFYRRDVYKYLSANKNEEPATVHYILSELGLSANCPSYYVTELCQKVHIFLMQYTQRWDSCIGIKRWFEEKNRAWLDAIFALPTYPTVGETAEKREKPYACTYYESDGLPVQICIDCINELNRSYTFALKCRDSDTKLRNYMQKLVPEEYAIPHGSNINYEHSSQMEKPLDIYEAQIKFEPNDTIKVETITEPELDIPDVPILLELNPDQRGLGYECNICQKRFKQASLLLRHQHQHHADLKVIELVNESSAHSDTSVTDPTKTEKPFSCKLCDTTFTRKDNLIIHMRKHTGEKPYSCTVCGNSFNKLCNLNRHQRTHTGEKPYSCTICQNTFKEQGHLKMHMRIHTKEKPYSCTFCEISFSRSIDLTRHLRTHTGEKPYSCPICSTAFNQQQHLKSHMHTHNKEKLFSCTVCVAAYSHPQSLEQHMRKHTGEKLYSCTTCNRTFVWKTDLTRHMRTHTGEKPYTCSVCKKAFKQQQHLQYHAQIHTRNNRYSCKICDQSFDVKSDLMIHKQTHTELKEFSCSDCDTSYFTKVELNRHMRRHAEVKDFCCNICSNSFILKSDLTRHMLTHGEEKPYSCTECGSSFKTYNHLTNHIMKTHAETH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-