Lspi000332.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000007.1:846171-856531[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0043 0.36 11.8 1.4 2 23 613 634 612 634 0.95 2 17 0.00045 0.038 14.9 1.9 1 23 657 679 657 679 0.98 3 17 5.2e-06 0.00044 21.0 0.8 1 23 685 707 685 707 0.98 4 17 3.2e-06 0.00027 21.6 1.9 1 23 712 734 712 734 0.95 5 17 0.00081 0.068 14.1 1.2 2 23 741 762 741 762 0.97 6 17 7.7e-06 0.00064 20.4 6.5 1 23 767 789 767 790 0.95 7 17 0.00016 0.013 16.3 2.8 1 23 792 814 792 814 0.97 8 17 9.5e-08 8e-06 26.4 0.7 1 23 819 841 819 841 0.98 9 17 0.01 0.83 10.6 5.5 1 23 847 869 847 869 0.93 10 17 1.4e-05 0.0012 19.6 2.7 1 23 874 896 874 896 0.95 11 17 1.6e-05 0.0014 19.4 4.2 1 23 902 924 902 924 0.97 12 17 2.6e-07 2.1e-05 25.1 2.0 1 23 929 951 929 951 0.98 13 17 0.00097 0.081 13.8 5.4 2 23 958 979 958 979 0.97 14 17 3.4e-07 2.8e-05 24.7 1.4 1 23 984 1006 984 1006 0.98 15 17 3.2e-05 0.0026 18.5 1.2 2 23 1013 1034 1012 1034 0.96 16 17 0.00086 0.072 14.0 3.5 1 23 1051 1073 1051 1073 0.97 17 17 6.2e-05 0.0052 17.6 0.8 1 23 1079 1101 1079 1101 0.97
Sequence Information
- Coding Sequence
- ATGAAATCATTATATGAAGCGTCATCCACGTTAAAACAAATTAGTTTTGCTGAAATGTTAATGAAATTTACACCATTGACATTTTTTGGATATGATGGTCTTCCAGCCCAAATTTGCCATAATTGTATTAGACAACTAAACATATCTTACATATTCCAATTAAAATGTCTAGAATCCGATGCCATATTACGAAAGGAAGAGGAAAACTTAAAACCGGAACGAAACATGATCACAAAATCAATTATCCAAGCAGAAGAGACCCCAGAATTTAGAATTAAATTAGAGGAAAACCAAAATAGTGAAAATATTAAATTACAGTGGTCAGCCATTGTCTCTGAACACAATTACCCCTGGATGTCATCATCAATTGTCGACACACTGAAAGATTTACACCAAGCATCAAATTTTGTAAACGATGACGAAGTCGAAAACGTAAACCCGAATAATGATGTACTCGAAAAACCAGTAAATACTTCTTTAACATCTGCCGAAATGCGCAATGCTTTAAACGAAGAGTTAGATGTTATAAAACATGAAATAAGTCTTGATAAGACCGAAATGGAAGAAGAAGATTTAACCGAATTCGACGAAATTCCTAATCCATTAATAACGCCTAATCTAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACCGAAATAGAAGACGAAGATCTAACCGCATTCGATGAAATTCCAAATCAATTAAAACCGCTTAATCCAAACCAAGAATTGATAAATCATGAAATAAGTCTTGATAAGATTGAAATAGAAGACGAAGATCTAACCGCATTCGATGAAATTCCTAATCAATTAAAATCGCTTAATCCAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGATTGAAATAGAAGAAGATCTAACCGAATTCGATGAAATTCCTAATCAATTAAAAACGCCTAATCTAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACTGAAATAGAAGACGAAGATTTAACCGAATTCGATGAAATTCCTAATCAATTAAAACCGCTTAATCCAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGATTGAAATGGAAGACGAAGATCTAACCGAATTCGATGAAATTCCTAATCAATTAAAACGGCTTAATCCAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGATTGAAATAGAAGAAGATCTAACCGAATTCGATGAAATTCCTAATCAATTAAAAACGCCTAATCTAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACTGAAATAGAAGACGAAGATTTAACCGAATTCGATGAAATTCCTAATCAATTAAAACCGCTTAATCCAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACTGAAATAGAAGACGAAAATCTAGTCGAATTCGATGAAATACCTAATCAATTAAAAACGCCTAATCTAAACCAAGAATTAATAAATCATGAAATAAGTCTTGATAAGATTGAAATAGAAGAAGATCTAACCGAATTCGATGAAATTCCAAATCAATTAAAACCGCTTAATCCAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACTGAAATGGAAGACGAAGATCAAACCGAATTCGATGAAATTCCTAATCAATTAAAATCGCCTAATCTAAACCAAGAATTGATAAAACATGAAATAAGTCTTGATAAGACTGAAATGGATGATAACATAATCAATCGAACTGAATTCATTGATGTATCAAAATTAAAAAATGTAACAGAAAACATACATAATTTAGCAAAACGTAAAAAAATCCCATGTACAATTTGTGATAAATTCTTTATTAAAAAACCACACAATACCATTCACACCCAACAGCATCTCGAAAATAAAGTTAATTCGTATCATTTATTGCATAATACACGAAAAGTAACTAAAAAGAAAACATATTCGTGTCTAATTTGCGAACAGAAATACACTAACATTAAATTATTCACAAAAcatatgcaaacgcatcaaagagaaaagccatatccgtgtacactctgtgataagtcttattcaactgaaacgagcttaaagttacatatgtcgtcacattctggtgaaacattcctgtgtacagtctgtgataagtcgtttGACAACAAAATTTATTTGAAGAATCATATGAAGAGACACAATGCAAAGAAACGGAATACTTGTACACTCTGTGATAAGTCTTACACAGCTAAAACGAGCTTTATGTTGCATATGTTATCACATTCTGGTGAAAAATTCATGTGCACAGTCTGTGATAAGTCGTTTAACAACTACAGCTATTTAACGCATCATATGAAAAACCACCATCGACACACTTGTACACTCTGTGATACGTCTTACACAACTGAAACGAGCTTAAAGTTACATATGTCGTCACATTCTGGGGAAACATTCGTGTGTACAGTCTGTGATAAGTCGTTTGACAACAATAGTTCTTTAACGGAGCATATAAAAACCCATAATCCAGAGCATCAACACACTTGTATACTCTGTGATAAGTCTTATTCAACAAAAACGTGCTTAAAGTTACATATGTCGTCACATTCTGGTGAAACATTCCTGTGTACAGTCTGTGATAAGTCGTTTAACAAAATAACTTATTTGAAGAGACATATGAAGAGACACAATGCAACGAAACGGCATACTTGTACACTCTGTGATAAGTCTTACACAACTAAAACGAGCTTAAAGTTACATATGTCGTCACATTCTGGGGAAACATTCGTGTGTACAGTCTGTGATAAGTCGTTTAACAATAAAACTTATTTAACGGTTCATATGAAGAAGCACAATCCAATGAAACGGAATACTTGTACACTCTGTGATAAGTCTTACAAAACTAAAACGTGCTTTAAGTTACATATGTTATCACATTCGGGGGAAAAATTCGTGTGTACAGTTTGTGATAAGTCGTTTAACAACAATAGTTTTTTAACGGCACATATGAAATATCACAATCCAGAGCATCGACAAACTTGTCAACTCTGTGATAAGTCTTATAGGACTAAAGCGAGCTTAAGGTATCATATGGTGAGTCATACTGGTGAAAAACGATTTcatatgcgatcgcatccggtacagaagcggcattcgtgttctgtctgcaagttttcgtttaaatggaagggacaattagagaatcacatgcgaaaacacactggggaaagaccgtttaagtgtacagtttgtgacgattctttttcatacagttcagctttaaatcgtcatacactactgcataatggacagaagcggtttgcgtgtgatgtttgtgataaTCGGGGTCCACCTCCGTCCTCGGGTGGACCCATCGTGACGCTACGACCCCACGGCAGGGTCAATCAACCAACGCACCCACCCGGTCTCGATGCCAAGTTCGGTAACACCTTGCTTCCCCACTGCACTCTGGCCGTACAGCGAATAGACACGGGGCCGTCCCTGACACCGAGCGCACCTACTGCCAACAACAACCATCATACTTTTGTGCCCCTAACGGAGCTTACTAGCCTGGAACTTCCAGCCCCTTACCCTGGCCGTCGTCTATCGGTATATCCAACCAAGAGCCCAACTGATACCGCTGAGTCATTTGCCAAACGGACTCGCAAATACTCACGATTAAACTGCCGAGAACAAATGGAAGCTACGATAGGCGACAGGACCCAGAACGCAAAGCCCAAACTGAGGGTGCATACTAAGTACCCCGACACCCGTAATGCCGGTCGAGGCGATGGGAGCGCACAAGCCATAAGTATACTTGAATTAGCCAACTTGTTGATTAAAAACGCTGAATAA
- Protein Sequence
- MKSLYEASSTLKQISFAEMLMKFTPLTFFGYDGLPAQICHNCIRQLNISYIFQLKCLESDAILRKEEENLKPERNMITKSIIQAEETPEFRIKLEENQNSENIKLQWSAIVSEHNYPWMSSSIVDTLKDLHQASNFVNDDEVENVNPNNDVLEKPVNTSLTSAEMRNALNEELDVIKHEISLDKTEMEEEDLTEFDEIPNPLITPNLNQELIKHEISLDKTEIEDEDLTAFDEIPNQLKPLNPNQELINHEISLDKIEIEDEDLTAFDEIPNQLKSLNPNQELIKHEISLDKIEIEEDLTEFDEIPNQLKTPNLNQELIKHEISLDKTEIEDEDLTEFDEIPNQLKPLNPNQELIKHEISLDKIEMEDEDLTEFDEIPNQLKRLNPNQELIKHEISLDKIEIEEDLTEFDEIPNQLKTPNLNQELIKHEISLDKTEIEDEDLTEFDEIPNQLKPLNPNQELIKHEISLDKTEIEDENLVEFDEIPNQLKTPNLNQELINHEISLDKIEIEEDLTEFDEIPNQLKPLNPNQELIKHEISLDKTEMEDEDQTEFDEIPNQLKSPNLNQELIKHEISLDKTEMDDNIINRTEFIDVSKLKNVTENIHNLAKRKKIPCTICDKFFIKKPHNTIHTQQHLENKVNSYHLLHNTRKVTKKKTYSCLICEQKYTNIKLFTKHMQTHQREKPYPCTLCDKSYSTETSLKLHMSSHSGETFLCTVCDKSFDNKIYLKNHMKRHNAKKRNTCTLCDKSYTAKTSFMLHMLSHSGEKFMCTVCDKSFNNYSYLTHHMKNHHRHTCTLCDTSYTTETSLKLHMSSHSGETFVCTVCDKSFDNNSSLTEHIKTHNPEHQHTCILCDKSYSTKTCLKLHMSSHSGETFLCTVCDKSFNKITYLKRHMKRHNATKRHTCTLCDKSYTTKTSLKLHMSSHSGETFVCTVCDKSFNNKTYLTVHMKKHNPMKRNTCTLCDKSYKTKTCFKLHMLSHSGEKFVCTVCDKSFNNNSFLTAHMKYHNPEHRQTCQLCDKSYRTKASLRYHMVSHTGEKRFHMRSHPVQKRHSCSVCKFSFKWKGQLENHMRKHTGERPFKCTVCDDSFSYSSALNRHTLLHNGQKRFACDVCDNRGPPPSSGGPIVTLRPHGRVNQPTHPPGLDAKFGNTLLPHCTLAVQRIDTGPSLTPSAPTANNNHHTFVPLTELTSLELPAPYPGRRLSVYPTKSPTDTAESFAKRTRKYSRLNCREQMEATIGDRTQNAKPKLRVHTKYPDTRNAGRGDGSAQAISILELANLLIKNAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -