Lspi011566.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leistus spinibarbis
Gene Symbol
-
Assembly
GCA_933228875.1
Location
CAKOGB010000257.1:48400-52653[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.0033 0.27 12.2 1.6 2 21 302 321 301 321 0.94
2 21 0.00036 0.03 15.2 0.9 2 21 323 342 323 342 0.96
3 21 1.6e-07 1.3e-05 25.8 1.1 1 23 371 393 371 393 0.98
4 21 0.0035 0.29 12.1 0.9 3 20 400 417 399 418 0.95
5 21 5.5e-07 4.6e-05 24.0 0.6 2 23 445 466 444 466 0.96
6 21 0.011 0.91 10.5 0.8 3 20 473 490 472 491 0.95
7 21 8.2e-06 0.00069 20.3 0.8 2 23 512 533 511 533 0.96
8 21 0.00067 0.056 14.3 0.3 3 23 540 560 539 560 0.97
9 21 1.5e-05 0.0012 19.5 6.2 1 23 566 588 566 588 0.98
10 21 2.9e-05 0.0024 18.6 2.7 1 23 978 1000 978 1000 0.98
11 21 0.0007 0.059 14.3 1.1 1 23 1007 1029 1007 1029 0.98
12 21 8.1e-05 0.0067 17.2 1.3 1 23 1035 1057 1035 1057 0.98
13 21 0.001 0.085 13.7 3.7 1 23 1063 1085 1063 1085 0.97
14 21 1.2e-05 0.001 19.8 0.7 1 23 1091 1113 1091 1113 0.99
15 21 4.5e-05 0.0038 18.0 1.5 1 23 1119 1141 1119 1141 0.99
16 21 0.0026 0.22 12.5 1.1 1 20 1147 1166 1147 1169 0.93
17 21 3.6e-05 0.003 18.3 0.4 1 23 1174 1196 1174 1196 0.96
18 21 1.6e-05 0.0014 19.4 0.7 1 23 1202 1225 1202 1225 0.96
19 21 1.3e-05 0.0011 19.7 5.7 1 23 1232 1254 1232 1254 0.99
20 21 3.5e-08 2.9e-06 27.8 0.8 1 23 1260 1282 1260 1282 0.99
21 21 0.00011 0.0093 16.8 3.1 1 23 1288 1311 1288 1311 0.97

Sequence Information

Coding Sequence
ATGCCTTCTCAAATATGTCATGATTGCGTCAGTGGCTTAAACCAATCCTACAATTTTGCAACAAAATGCAGGGAATCAGACGAGAAACTGCAGCTTTATTTCCAAAATAAGATCAATCAAGAAATTAATTTATCCAAACATGAAGTAGATTACGTTACCAATATTATTCAACATTTGTCTGAAGAAAACCAAAACAACGAAAATGCATGTTCACATTTAAATGAGATTGCCAATCAATCAAGCAATTCACCAATCGAGTCTCTCACATCCATTAGAATACGAAATGATCTACGCGACCTGATATCAACTGTTGATAATCAAAACATACCCAATACAGTTCCATTAGCAATTATTCCTACTGAAAATGTTGCTAAAGAAAATATAACTGAAGTTCGTGCTGCAGCACTAGATGATCCACAAACGGAAGAAAATGACCAAATTCAGAATTTAAACTGGTTAAAAAGTGAAATAAATTACAGAAATGAAACAAAACATTCAATTCCAATTGATAATGAGGATCATATGCCATTGAATGATTTAATAACTGATCCAACAATCGAAAATGACATCAACAGTTTTCTGAAGGACCCACTTGAAATCAATAACATATCGATAGAATTGGGTCCTCACCTGAAAGTTGAATCTTTATCTGATCAAATATCATTATCATCAACTTCAGCAAGTCCGAAATATGAAGTAAATAACGAAACAGACATTGAAGATAACTCTCTTGATACATTACATAGTTTGAAAATTATAAATAGCACAAATGGCATAATAAAACAAATTGATAATTCATCATTCAAAGAAACATGTATACCTCGTAACTTTTTAAATTCTTTCGTATTGTTAACGAGATGTGATGAACCAAATGCTCAAAAGAACACCAACATTAAACTATTGCAATGTACAATTTGTGAGAAAACTTATTTAAGAAAAGAACACTTAAGACGCCATACGAAGCCAACCTGTACGGTTTGTAAGAAATCATTCAGAGGAAATTATGAATTATCACGCCATACGAGATGTGATAAATCAAAATTAATAAACATGGGTCTGCCAAATAGTAAGGCAATATCAGATGAGCAAAAGAGCACCAACTTTAAACTATTTCAATGTACAATTTGTGATAAAACATTTACAAGAAAAGGTTACTTAAAACTTCATATGGTTGTTCATTATAAAAAGAAACCCTTTTGTACGATTTGTAAAAAAAATTTCAGAGGAAACTATGAATTATCACGTCATACAAGTTGTGATGAATTAAAGTTAATAAACATGGGTCTGCCAAATAGTAAAGATGAGCAAAGGAACACCAACATTAAACTATGGCAATGTACAATTTGTGATAAAACATTTAAAAGAAAAGGATACTTAAAACTTCATATGGTGGTTCATTATAGAAAGAAACCATTTTGTACGATTTGTAAACAAAAATTCAGAGGAAACTATGAATTATCACGTCATACGAGTTGTGATGAATTAAAGTTAATAAACATGGCTCTGCCAAAGAACACCAACATTAAACGTTTGCAATGTACAATTTGTGATAAAAAATTTAAAAAAGTAGGCTACTTAAAACGTCATATGGTTGTTCATTATAGAAAGAAACCATTTTGTACGATTTGTAATAAAATTTTCAGAGGAAACTATGAAGTATCACGTCATATGGTTGTACATACAAAGAAAAGTCTATTTTCATGTAATATTTGCGGGAAAAAATTTAAACAAAAATGTTATTTTAGCATTCATATGCGTAAGCACTGCTGTGTAATCAAGCAAATAAATACCGATGAACAATCTAATAATATAGAACATCAAGATAAACACTCGGATAATGTGATCCATGAAAATAAACCATCAGGAAATTGTCAAAATAATCAATCAAACGTTGAAGATTATCAAAATGAGCGAACAATGCTCGAAGATGGATCATTGAATACTGATATTAAGGAAAATTTACAATCAAATATAAATACTGAAGCGAAATTATCAAATAATATTTTGTTCTCACAAAATATGGACTATCAACGCGAAATAGTTAATAATACGTATCAAAGTGAACGATCAAATACCGAAGAATATCAAAGTGATCAAACAGAGAATAAGGACAGTCAAAATATATCAGCTAACAATTTTGACTGGCAAATGTATGGGGCACGAAAACGAACCCGACCTGTGGAGAATAAAGATGAAATCTCTCAAAGTGAAACATCGAATAATGATCAATGTCAGGGGGCATCATCAAACTATACGGACTCTGAATGTGAATCATCAAATGATGAAGATTATGAAATAAAAGCATTAACTCATCACCAAAAAACTGTAAAATCTATTAACGTGAAAGACCAAACTGAACAGTCAAATCATCATACAAACTCTGAAGATGAGGTATCGATTAATATGGACCATGGAACTGACTCTCAAATTAATCGACTAAATACGGAGGTCAGTCAAAATAAACTATTAAAGAACGAAATGAAACTATGTAATACTAAATATAATCAACTTAACCAATCGATCGTTGGAGAATACGAAATTGAGAGCAATCAAACAGAAGGATCAAATATTAACAACTATCAAAGTGAACTATTAAGTAATACAGACTCTCAACATTCAAACGCAGATAATTATCATAGTAAGGAATCAAATAATGAGATCTCTCAATGTGAACGTCTACGTATTGAAGACTGTCAAACTGAACCATCAAGTATTGAAAGTATTCAAAGTGATGGAATTAATATGGAGGAAAATCAAAATAAACTATTAAGTAATATAGACTACGAAATAAAACTATTAAATACTGAAGATAGTCATCGTAACGAATCGAACGTTAAGAATTACGAGATTGGACCTTGTAAAGAAAACGGTCCAACAGAAATATCAAATACTGACAACTGTGAACGTGAACTTTTAAATTCGAATAAAAATTATGCGTGTACAATTTGCAGAAGAAAGTATAAATATCGCAATTCtttaagagaacatatgcgaacgcatacccatcccaaaaagcgtcacaaatgtcaagtttgtgcgcacccattccgagaagccgctgagttaaaggatcacatgaaagtgcacactgcgaagaatccattcacatgttcattttgtgagaaagtatttttcacaccaaaggttttaaaaattcatatgcaatcacatgatgaagacaaaccattctcatgtacgaaatgtgatcgtaaattttccaaaaagaAATATGCACGAAGACATGAACAGGTGCATTTGGATATAAAAAAATATAAATGTGATGTCTGCGGTCGTTTATTCCGTGAAGCTGGTAACATGAGAACACATATGAAGAAACATTCAGGCGAAAAAGCATATTCCTGTTCAATGTGTAGCAAATCATTCTACGAAAAAGAAGATTATGAGTTACATATGCAAACTCATTACCAAACCAAAGAGTTTCCATGTCCGATTTGCAACCATTTCTTTAATACCAAGAAACAGGTGCGAGAGCACTTGCCTGTGCATTCTGGCGAAGGTTTTATTTGTTCCGTTTGTGGCAAGAAATTTGCGTTAAAAACAAATTTACGAGAACACCTTGTATCGCATATCGAAGAAAGATTATTCGCGTGCACAATATGTGATAGTTCATTTAAGTCACAGCGAAAGTTAAATatccatatgagactcgtgcatgctaaaggagagagaccatatcaatgttcattttgcgataaatcttttcgaaaaagtgaatgccttaaagtacatacacggacgcataccaatgaaaggccgtatccatgtactgtttgcgataaatcattcaaacaaagcgctactttaactcttcatatgcgaacccatactgatgaaagaccgtatccatgtacttattgtgatttgaagtttAAAGTTAAACAACATTTAACAGAGCATATTAAAAATAAGCATTCAGAAAAAGATTAA
Protein Sequence
MPSQICHDCVSGLNQSYNFATKCRESDEKLQLYFQNKINQEINLSKHEVDYVTNIIQHLSEENQNNENACSHLNEIANQSSNSPIESLTSIRIRNDLRDLISTVDNQNIPNTVPLAIIPTENVAKENITEVRAAALDDPQTEENDQIQNLNWLKSEINYRNETKHSIPIDNEDHMPLNDLITDPTIENDINSFLKDPLEINNISIELGPHLKVESLSDQISLSSTSASPKYEVNNETDIEDNSLDTLHSLKIINSTNGIIKQIDNSSFKETCIPRNFLNSFVLLTRCDEPNAQKNTNIKLLQCTICEKTYLRKEHLRRHTKPTCTVCKKSFRGNYELSRHTRCDKSKLINMGLPNSKAISDEQKSTNFKLFQCTICDKTFTRKGYLKLHMVVHYKKKPFCTICKKNFRGNYELSRHTSCDELKLINMGLPNSKDEQRNTNIKLWQCTICDKTFKRKGYLKLHMVVHYRKKPFCTICKQKFRGNYELSRHTSCDELKLINMALPKNTNIKRLQCTICDKKFKKVGYLKRHMVVHYRKKPFCTICNKIFRGNYEVSRHMVVHTKKSLFSCNICGKKFKQKCYFSIHMRKHCCVIKQINTDEQSNNIEHQDKHSDNVIHENKPSGNCQNNQSNVEDYQNERTMLEDGSLNTDIKENLQSNINTEAKLSNNILFSQNMDYQREIVNNTYQSERSNTEEYQSDQTENKDSQNISANNFDWQMYGARKRTRPVENKDEISQSETSNNDQCQGASSNYTDSECESSNDEDYEIKALTHHQKTVKSINVKDQTEQSNHHTNSEDEVSINMDHGTDSQINRLNTEVSQNKLLKNEMKLCNTKYNQLNQSIVGEYEIESNQTEGSNINNYQSELLSNTDSQHSNADNYHSKESNNEISQCERLRIEDCQTEPSSIESIQSDGINMEENQNKLLSNIDYEIKLLNTEDSHRNESNVKNYEIGPCKENGPTEISNTDNCERELLNSNKNYACTICRRKYKYRNSLREHMRTHTHPKKRHKCQVCAHPFREAAELKDHMKVHTAKNPFTCSFCEKVFFTPKVLKIHMQSHDEDKPFSCTKCDRKFSKKKYARRHEQVHLDIKKYKCDVCGRLFREAGNMRTHMKKHSGEKAYSCSMCSKSFYEKEDYELHMQTHYQTKEFPCPICNHFFNTKKQVREHLPVHSGEGFICSVCGKKFALKTNLREHLVSHIEERLFACTICDSSFKSQRKLNIHMRLVHAKGERPYQCSFCDKSFRKSECLKVHTRTHTNERPYPCTVCDKSFKQSATLTLHMRTHTDERPYPCTYCDLKFKVKQHLTEHIKNKHSEKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-