Lspi019779.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000721.1:13482-19484[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 2.8e-05 0.0024 18.6 2.1 1 23 131 153 131 153 0.96 2 23 1.4e-05 0.0012 19.6 4.4 1 23 159 181 159 181 0.99 3 23 2.4e-06 0.0002 22.0 1.1 1 23 187 209 187 209 0.98 4 23 0.00066 0.055 14.3 0.4 1 23 215 237 215 237 0.97 5 23 2.4e-06 0.0002 22.0 4.4 1 23 243 265 243 265 0.98 6 23 0.00042 0.035 15.0 2.7 1 23 271 294 271 294 0.98 7 23 2.3e-05 0.002 18.9 1.3 1 23 314 336 314 336 0.98 8 23 1.4e-05 0.0011 19.7 1.1 1 23 361 383 361 383 0.98 9 23 5.2e-07 4.3e-05 24.1 0.7 1 23 389 411 389 411 0.98 10 23 2.6e-07 2.2e-05 25.0 0.5 1 23 417 439 417 439 0.98 11 23 0.0036 0.3 12.0 0.5 1 23 445 467 445 467 0.97 12 23 5e-07 4.2e-05 24.2 3.3 1 23 473 495 473 495 0.98 13 23 5e-05 0.0042 17.9 4.2 1 23 501 524 501 524 0.97 14 23 1.8 1.5e+02 3.5 0.1 1 9 551 559 551 567 0.80 15 23 4.4e-06 0.00037 21.2 3.8 1 23 650 672 650 672 0.98 16 23 1.4e-05 0.0012 19.6 1.3 1 20 678 697 678 700 0.91 17 23 1.6e-05 0.0013 19.4 4.6 1 23 706 728 706 728 0.98 18 23 2.1e-05 0.0018 19.1 3.0 1 23 734 756 734 756 0.98 19 23 6.5e-05 0.0055 17.5 4.9 1 23 762 784 762 784 0.99 20 23 4.6e-08 3.9e-06 27.4 3.0 1 23 790 812 790 812 0.99 21 23 0.0001 0.0086 16.9 1.6 1 23 818 840 818 840 0.98 22 23 0.00014 0.011 16.5 2.1 1 23 846 868 846 868 0.98 23 23 0.0062 0.52 11.3 3.2 1 20 874 893 874 896 0.92
Sequence Information
- Coding Sequence
- ATGTCTAATTTAAGTGATATAGAGTTAAATAAAGTGTGCAGAACATGTTTATCGCCATCCGAAGATATGAAATCATTGTATGAGGGTTGTTCAATGGATATTAAACCATGTTTGGCCGATATCCTGATGTCATTTACGACATTGAAGTGCTATGGAAACGATGGTCTTCCGTCACAAATATGCCACAATTGTACTGGCGAACTAATCCGGGCACATGCATTTCAATTAAAATGTCTAGAATCCGATAAAATGTTGAGCCATATATTAGAAAATAATATAGAAGAAGTACAATGTTCTGTTGTTGATAATAACATAACGTCACAAAATGATCCACTTGCAATAACCGAACTGCACTTGGTTAAAGATgagattgaaaccacagagaaaccatatttgtgtaccgattgtcacaaaacgtacacagaaatagatgcatttataaagcatatgcgaacgcacactggagagaagccgtattcgtgtacagtatgccacaaaacgtttaaacgaaaagatgcatccataaaacacatgcgaacgcacaccggcgagaagccatattcgtgtacaacttgtgacacttcctatgcggataagacaagcttaagaaaccatatgcggtggcatagcgacaacaaaccacatgtgtgtcaagtgtgtgaccaggcgtttccaattttaaaactattacggctgcacatgtcgacccatcctgaattgcgaccgtttccgtgccagcaatgtgacagttcgttcaaacgaaaagattccctgcacaaacatatgcgaacgcacaccggagaaaaaccatattcgtgtaccatctgtgatatttcctattcttgtcagactacattggcaaaacatatgcgacgacagcatcaaggccaaaTATACTCGTGCACAGTTCGCGACGATAATACGCATGAACAAAATGCCTATTCGTGTACAGAATGCGATAGTGTGTTTTGTGACAGCCCCACTTTAAAAGATCACATGCAAATGCATAAAGAGGACATATTGTTGTGTACAGTTCGCGACAATAATACAGAATGCGATGTAAAAActaaacagaaaccgtattcctgtacagaatgtaacagttcatttaatcgtaaagcaaatttagcgctacatatgtacaggcattctggccagaagccatattcgtgtacagtatgccgcaaaacattcgcgcgaaaggatgcgttgggaaaacatatgcgaatccacaccggagagaaaccatattcatgtacaaattgtgacatttcctttgcagatagatccagcttaacgaatcatatgcggtggcatagcgacaacaaaccgcatgtgtgcactgtttgtgaccaggcgtttccaatcttaaaattattacggctgcacacgtcgacgcatcctgaattgcgaccatttccatgcagtcactgtgacagttcgtttaagcgaaaggattcattacaaaatcatatccgtacacacaccggtgagaagccattttcgtgcacaatctgtaatgtatcattttgtgaccggtctagtttgacatatcatacgcggCGGCAGCATAAAGGGGAGATATATTCGTGTACAATCCCTGACAATAATATGGAATGCGATGTATACGTTGCGAATGAACCGATACGATATTCGTGTACGGAATGCGACAAATTCGCGAATGTTAAAATTGAACTGGAAGATGAGGATTCATCATACAAAAATGATGACTTACATGGTTCTAATATTATTGGTGTACAACAAAATGATTCTACACTTAAAGATCCATTAACAATGACCGAAATGCAAGAAGACCTGGACCAAGAATTAGATTTGGTTACAAATGAAATTGATATTAAGATTGAAATGAAACATGACGATAACATCGACACCAAAAAGTCGAAAATCCCTGCAAATGATTtgaaatctgaaactgaaaagcagcgatatttttgtgcaatatgcaacaaatcatacaagttaaaatcgcatttaacgattcatatgaggaaacacaacggagagaaaccatatgcgtgtactcaatgcgacaagtcgttctatcaaaaaacacaattaaatagacatgtgcctacgcatgccagagagaaaccatattcatgttcactctgcacaaaatcgttctatcacaaagattacttaacaaaacatttgcagatacatacggaagagaagccatattcgtgtacagtgtgtaatgtctcgtatagtagaaaagagcatttgatacgtcataaacaaagtcacaacggggaaaagccatattcgtgtacaatttgtgattgtacattccagcgaaatcatgttctaaatattcatatgcgtacccatacgggtgagaagccatattcgtgtacagtttgtgataggtcgtttattcgtaaagcacatttgactcgtcacatgcagacgcatagtaaagagaagccatatgcgtgtacagtttgtgagcatttgtttcagcgcaaggaacttttaacggttcacatgcggacacacaccggtgagaaaccatatccgtgtactgtttgtgaccgttcgtttcatcgcaaacaaatattaactgtacatatgcggaatcataccggtaataaaccgtatacgtgtacacgttgtggtagtgcgttcaagcaaaaatcacatttaacgtttcatatgtggaaacataACTAA
- Protein Sequence
- MSNLSDIELNKVCRTCLSPSEDMKSLYEGCSMDIKPCLADILMSFTTLKCYGNDGLPSQICHNCTGELIRAHAFQLKCLESDKMLSHILENNIEEVQCSVVDNNITSQNDPLAITELHLVKDEIETTEKPYLCTDCHKTYTEIDAFIKHMRTHTGEKPYSCTVCHKTFKRKDASIKHMRTHTGEKPYSCTTCDTSYADKTSLRNHMRWHSDNKPHVCQVCDQAFPILKLLRLHMSTHPELRPFPCQQCDSSFKRKDSLHKHMRTHTGEKPYSCTICDISYSCQTTLAKHMRRQHQGQIYSCTVRDDNTHEQNAYSCTECDSVFCDSPTLKDHMQMHKEDILLCTVRDNNTECDVKTKQKPYSCTECNSSFNRKANLALHMYRHSGQKPYSCTVCRKTFARKDALGKHMRIHTGEKPYSCTNCDISFADRSSLTNHMRWHSDNKPHVCTVCDQAFPILKLLRLHTSTHPELRPFPCSHCDSSFKRKDSLQNHIRTHTGEKPFSCTICNVSFCDRSSLTYHTRRQHKGEIYSCTIPDNNMECDVYVANEPIRYSCTECDKFANVKIELEDEDSSYKNDDLHGSNIIGVQQNDSTLKDPLTMTEMQEDLDQELDLVTNEIDIKIEMKHDDNIDTKKSKIPANDLKSETEKQRYFCAICNKSYKLKSHLTIHMRKHNGEKPYACTQCDKSFYQKTQLNRHVPTHAREKPYSCSLCTKSFYHKDYLTKHLQIHTEEKPYSCTVCNVSYSRKEHLIRHKQSHNGEKPYSCTICDCTFQRNHVLNIHMRTHTGEKPYSCTVCDRSFIRKAHLTRHMQTHSKEKPYACTVCEHLFQRKELLTVHMRTHTGEKPYPCTVCDRSFHRKQILTVHMRNHTGNKPYTCTRCGSAFKQKSHLTFHMWKHN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -