Lspi013188.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000315.1:225899-227686[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.8e-09 5.1e-06 26.5 0.0 3 41 20 59 18 61 0.90
Sequence Information
- Coding Sequence
- ATGCCGAGAATATATAAAAGACAAATAGGATCACGACATTATAAAAATTTTTCTAAAGAAAAATTAGAAGAATGTCTTAGTAAAATTAGATCTGGTGCTATGTCACATAGAACTGCTAGTAAATGGTATAAAATTCCGAGATCAACTATTCAAAATAAATTGAAAAATAAACATACAAAATCAGTGGGCGGTCAGACTATTTTAACTAAAGAAGAAGAACAAATATTAAGTGATTACATACTTCTCTTGTCTCGCTATGGCTTTCCTTTAGATCAATATGACCTTAAATTCTTAGTAAAAGCTTTTTTAGATCGAAAAGGTGTAAATATTAGACAAATGAAAGACAATTATCCGGGATACGATTGGTCAAAGGGATTTTTAGACAGAAATAAAAATATTACCACACGATTTGCGGTCAATATAAAATTGCAAAGAGCTACGATAACACCaaaaataattaatgattattttgatgaactagagaataatttaaaagatgttccgccgtccaaaatatggaattatgacgaaactaatcttacagacgatccgggaaataaacgtgtgctaactaaacgtggatgtaaatatcccgaacgtttgatacattcgtcgaaatcatccacatcattgatgttttgtgggaatgcagagggtgaaatgttacctccttatgtagtgtataaatctcgaaatttatacgatacttggactgaaggggggcccacggggtgtcgatataaccgaaccaaaagtggctggttcgatacagttacatttgaagactggttctcaaaattggtattaccaaggataaaggaacaaacagggaagaaagttgtcattgATTCCTTATTATTATCTGGGGCTAAAAATTTAGCCAACGGATTCCGTAAATGTGGAATATATCCACTAAATCGAAAAGAGATTCTCGACAGGCTTCCACAAGAAACCTCGGATTTTAACTCATCGTCAGAAAATATTTCAAATATAGTTGTGGATTTTTTGGAAAATAAACGTTTCGGTAGAGAAACAAGTGGGACCCAAGAAAATACCAAAAAAAGAAAAATTAGTGTCGTAGCAGGTAAAAGCATTTCCGTAGAAGACGTCAAAGAAAAAGAAAAATCTAAACCAAGTAACAAAACGTCTGGTAAGAAAACTAAAAGAACATCCGAATCTGAATCTTCAACAAATATGTCGCTATATTCTGAGGGTGAAGGGGATGATTGGGGTCGCTGCAGTAATTCTTCAAACGTTACAGAGGATCTTACGGCTCAAGATAACAATAAATTTTTTAAATCGAATATTAAAACAGAGGACTTCGTAATTTTTAAATACGAACAAGAATATTTTCCAGGACAAGTGGTAGAAATGAAAGAAAAACAATTAAAAATTAAATCCATCACTATGTCAGGCAATAGTTGGAGATGGCCAGAAAGAAATGATATCATGTGGTACAACCTGAATGAAATTGAGCAAAAAATACGAAGACCACTGTTCACAAAACGTGGATATTGTAAAATAAAAGAGATCGACTTTTTAAGGCAAAAATAA
- Protein Sequence
- MPRIYKRQIGSRHYKNFSKEKLEECLSKIRSGAMSHRTASKWYKIPRSTIQNKLKNKHTKSVGGQTILTKEEEQILSDYILLLSRYGFPLDQYDLKFLVKAFLDRKGVNIRQMKDNYPGYDWSKGFLDRNKNITTRFAVNIKLQRATITPKIINDYFDELENNLKDVPPSKIWNYDETNLTDDPGNKRVLTKRGCKYPERLIHSSKSSTSLMFCGNAEGEMLPPYVVYKSRNLYDTWTEGGPTGCRYNRTKSGWFDTVTFEDWFSKLVLPRIKEQTGKKVVIDSLLLSGAKNLANGFRKCGIYPLNRKEILDRLPQETSDFNSSSENISNIVVDFLENKRFGRETSGTQENTKKRKISVVAGKSISVEDVKEKEKSKPSNKTSGKKTKRTSESESSTNMSLYSEGEGDDWGRCSNSSNVTEDLTAQDNNKFFKSNIKTEDFVIFKYEQEYFPGQVVEMKEKQLKIKSITMSGNSWRWPERNDIMWYNLNEIEQKIRRPLFTKRGYCKIKEIDFLRQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -