Lspi000835.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- bab1
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000014.1:1390274-1392148[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4e-15 5.3e-12 45.6 0.1 3 45 369 411 367 411 0.92
Sequence Information
- Coding Sequence
- ATGAGCGGGGGTGcgcaacagtactgcctgcggtggaacaaccaccgttccaatcttttgaccgtcttcgacgaacttctgcaaaacgaagcgttcaccgatgtaacgctcgcctgcgacggtggcacctcaataaaatgccacaaaatggttctagctgcgtgctcctcctatttccaaacccttttcaccgaactcccgtgcagccatcctgtggtcgtcctaaaagacgtcaaatactcggaaatcaaagcgatactcgagtacatgtaccgcggcgaagtcaacgttgctcaagaccacctggccgctcttctcaaagtcgccgaagcattaaaagttaaaggtttagTAGAAGAAAACCGAAGCTCACATCAACCAGAGCCGCACCATGATGACGATCATCAAATGCGGCAACATTCACCGCCTACAATAAGTACGTCAAGTGCGAATATTCAATCGGCAGCTCACAGTAGTAGTAGCAATGCTTCGCCGCCTCACTCAACTGGTATAAATGGGCCGACTTCCTATAACAGCTCAAAAATGCATTACGGTAACATGTACAAGTCGCCAGTCATGGATCGAAACCAACGAATGAGTATGCCAATGTGGGCAGTGCCCGGTATGCCTCTATCGCATCACACCTCTACGATATCACCACAAGGTCACCCGCACGCAGCGGCAACTGCTGCCGCAGCTATGTTGTCCAGCTGTTACGATGCAGCTAGCGCAGATATGTCCCCGCTGAAACGGAAGAAATTATCCAGCTTACTAATGAACCGCGATACACCTATTTTGCGAACGGTACTTGGCCAAGGACAACCGGATTCATCACAACCGGTGTCAATGGTCTGCCATCCGGATAGCCACGAGAATATGAATTCAAATGGGTCCACACATGATAACGAAAAGGTACTACGAAATGAACCATCTGAAGATGCTCAATCGCCATACACTGATATATCCTTAATGGACGACGAAGAAAAAAGCAAACTAGTTCCTTCCTCATCCCCTCTTTCTTTCGGAGGAGGAGTATCTTCAGGTATCGCCACTTACGTTCCGCAGCAAAAGCCCGAATGGAAACGCTACAAACAGTACACCCGTAACGATATAATGTCCGCGATTGAAGCAGTTCGAAATGGAATGAGCGCCTTACAAGCCGCCCGCAAATACGGCGTCCCCTCCCGCACACTTTACGACAAAGTTAAAAAATTAGGAATCACCACAAGTCGGCCTTTCAAGCGAGGAACTAATGGCAGCAGTGCCTGTTTTCCTTACGGCTTAAGTGGAACCAGCTCACCCTATGGTGGACATACCTCTGAAGGAGACGACACTGGACATGCAGCATTATTAGAAGCAAGTTTTCTGCAACATGCCTTAGATCAACGTGGCGGAGATGTTGGGGAAAGGGAAGCTCTGGCAGCAATGGCAGCGGCAGCTGCAGCTCACCACGCAGCTGCGACTGGGAACTCAACAAGTCCTGGAAATCATGGAATGGCTCGATCGCCTAGTCCAAGTCCAAGTTTGATTAAGTATATGAGACAGAATAGTTTAACCCCATCGCCCGCAGGTGGAAGTGACCACCATCACAGCGAAACGAATGGTAGTTCGGAACGAGATCGAGACGACGACGAAGACCAAGTCGAGGACTTGTCAATGTCGCGAAAACCTGAACCACAGCATCAACAACGCGTTATAATGCCACCGATGAATCAAGTTTCAACAATAATAAAGAAAGAAGACTCCTTGAAAGAGGGGTTAAGAGATGACACGGTTCGACGAGAAATAAAAGTCGAGGAAAATGAGTGA
- Protein Sequence
- MSGGAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACDGGTSIKCHKMVLAACSSYFQTLFTELPCSHPVVVLKDVKYSEIKAILEYMYRGEVNVAQDHLAALLKVAEALKVKGLVEENRSSHQPEPHHDDDHQMRQHSPPTISTSSANIQSAAHSSSSNASPPHSTGINGPTSYNSSKMHYGNMYKSPVMDRNQRMSMPMWAVPGMPLSHHTSTISPQGHPHAAATAAAAMLSSCYDAASADMSPLKRKKLSSLLMNRDTPILRTVLGQGQPDSSQPVSMVCHPDSHENMNSNGSTHDNEKVLRNEPSEDAQSPYTDISLMDDEEKSKLVPSSSPLSFGGGVSSGIATYVPQQKPEWKRYKQYTRNDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGSSACFPYGLSGTSSPYGGHTSEGDDTGHAALLEASFLQHALDQRGGDVGEREALAAMAAAAAAHHAAATGNSTSPGNHGMARSPSPSPSLIKYMRQNSLTPSPAGGSDHHHSETNGSSERDRDDDEDQVEDLSMSRKPEPQHQQRVIMPPMNQVSTIIKKEDSLKEGLRDDTVRREIKVEENE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00903401;
- 90% Identity
- iTF_00873168;
- 80% Identity
- iTF_00873168;