Lspi012027.1
Basic Information
- Insect
- Leistus spinibarbis
- Gene Symbol
- -
- Assembly
- GCA_933228875.1
- Location
- CAKOGB010000279.1:520998-524654[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 4.9e-11 6.5e-08 32.6 0.0 4 39 195 229 194 234 0.93 2 3 3.6e-13 4.8e-10 39.4 0.0 5 40 262 296 260 298 0.95 3 3 8.6 1.1e+04 -3.4 0.0 29 38 568 577 568 578 0.87
Sequence Information
- Coding Sequence
- ATGTCAAACGCAAATGTATTTGATTTTCATAATGTGTGCAGAACATGTTTAGCAACTGGCGAATTAAAATCATTGTATGAGGACTGTTCGGTGAAAGATTCGTTCGCTGAAATGTTAATAACATGTACATCAGTGACATATTATGAAAATGATGGGCTGCCAATACAAATTTGTAGCAATTGTATTAATGAATTAAATCGGTCGTATAAATTCGCAATAAAATGTCGAGAATCCGACAACAAATTACGGCTGTATATGCAAAAACTTGTCCCGGAAGAATATGCTAAATCGCCATTTTGTAATAAGAGTAATGTTGAACAAAGTTATACACCGATTATAGATCCACTTGCAATGCATGAAATACAGAATAAAGTTGTGATCAAAAATGAAATAGAACTCGTTGAAGCGGAAACGGATCATGTGGAACAATTGGATTGTGTAAAATTGGAAAAAAATCATATTGAAGATGAACAACCTGATATTTGTAGCATTAATACGCTACAAAACTCAAATCAATGCCGCCAACAAGAAATAACGCATTTGCAAGAACCTGATAATATAAAGTGCTTCTACGATATTGCGTCTATGAAGTTAGCTGTAAATGCAGTTAGAAGAGGATTATCTTTGACTGCAGCAGCAAAAAAATATAGTGTGCCAAAATGTACTTTGAGTAAACATTACAAAGACATTTTTGGGGTTGGAGCCTCAAATAGACGTAAAGTTACTGTGGTGCAAAAAATGCAAAAAAGTGAAAAAGTAAGATGCCTTTATGGCGTGTCTTCGTTAAAAGAAGCCGTAGACGCTGTTAAAAATGGATTATCATTGCATCAAGCATCGTACAAATACAACGTGCCAAAATCAACATTAGCGCGACATTACAAAACCAATAGTTTTGATTTAGGCGGTGGGCGGAAACAAGAGCTAACTAGTGGGGACGAAAAAAAAATTGCCACATTTTTATTACAATGCGGCTGTGAAGGTTTCGGATTAACGAAAGCCGATATGTTTCCGCTAGTTAAGGAATTCTTGCGAGACACCGGGATTAGCGCCAGTTGGGGCGACCAAGGCCCTGGTTTAACCTGGTTTAATTGCTATATGAAACGGCACCCGGAAGTACCTTGTCGGAAACGGGAAAAAATCAAACAAAACGGGTTTGAAATATTTTTGATTAACGCATGGTTTGAGTCACTGCAAAGGGTTTATAAAAGCGAGCAAATTGAAGATAGTGATGGCGGCCGGATATACAGTTGTGTGGAGACTAGTTTTACGCGTGATGGTAACAAGAACACGAGTGTGGTCGCTTGTTGTAGTGCTGATGGTAATAAAATGCCACCGTTTATTATATTTGATGGGGATTTCGTTTGGGCAAACTGGGTTTCTCCGGATGATTACCCAGGAACTGTGTATGTGGCAAAGAAAGACTGGAATAGCCAAGATATATTTGTCCATTGGTTCGAATCCATATTTTTAAAGAATCTTCCCTCGTTTGAAGTTAGAAATACTATTATACTTATATATGATGACGCCTTTACACATGTTAATTATAAACTAGCAAAGACTGCCTATGATAATAAGATCGTTTTAATGAAACTAAGTCCACATATGGCGCAACCTTTAAACAATACAGTGTTTTTACCGATGAAGACAATGTGGAATAAGTTTTACTTTGAATATCATGCAGAAAATCCAGGAACGGTGATGCCTCATCAGACGTTTTCGATGTATGTTAAAGTGTTATGGGAACAAACTTTCGATGTAGATCTCATTGTTTCGGGCTTTAAGTCAACTGGATTATTTCCAATAGACTCGCAACTTTCTAAAACTAGTAGTGCAATCAAAATAGAAAAGGTTGATGACTTCGATAATATGAATCAATAA
- Protein Sequence
- MSNANVFDFHNVCRTCLATGELKSLYEDCSVKDSFAEMLITCTSVTYYENDGLPIQICSNCINELNRSYKFAIKCRESDNKLRLYMQKLVPEEYAKSPFCNKSNVEQSYTPIIDPLAMHEIQNKVVIKNEIELVEAETDHVEQLDCVKLEKNHIEDEQPDICSINTLQNSNQCRQQEITHLQEPDNIKCFYDIASMKLAVNAVRRGLSLTAAAKKYSVPKCTLSKHYKDIFGVGASNRRKVTVVQKMQKSEKVRCLYGVSSLKEAVDAVKNGLSLHQASYKYNVPKSTLARHYKTNSFDLGGGRKQELTSGDEKKIATFLLQCGCEGFGLTKADMFPLVKEFLRDTGISASWGDQGPGLTWFNCYMKRHPEVPCRKREKIKQNGFEIFLINAWFESLQRVYKSEQIEDSDGGRIYSCVETSFTRDGNKNTSVVACCSADGNKMPPFIIFDGDFVWANWVSPDDYPGTVYVAKKDWNSQDIFVHWFESIFLKNLPSFEVRNTIILIYDDAFTHVNYKLAKTAYDNKIVLMKLSPHMAQPLNNTVFLPMKTMWNKFYFEYHAENPGTVMPHQTFSMYVKVLWEQTFDVDLIVSGFKSTGLFPIDSQLSKTSSAIKIEKVDDFDNMNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -