Lko_23647-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01129330.1:113824-125543[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.4 4e+02 1.4 0.1 1 9 212 220 212 225 0.84 2 11 0.1 4.8 7.4 2.7 1 23 361 383 361 383 0.89 3 11 0.011 0.52 10.5 1.9 2 19 398 415 397 418 0.92 4 11 0.046 2.2 8.5 3.5 1 23 425 447 425 447 0.94 5 11 8.4e-05 0.0039 17.1 0.3 2 23 454 476 453 476 0.97 6 11 8.4e-06 0.0004 20.3 0.7 1 23 482 504 482 504 0.97 7 11 5.3e-05 0.0025 17.7 0.6 1 23 510 532 510 532 0.96 8 11 5.9e-05 0.0028 17.6 4.1 1 23 538 560 538 561 0.96 9 11 8.5e-05 0.004 17.1 1.5 1 23 576 598 576 598 0.98 10 11 0.0022 0.11 12.6 1.1 1 23 614 637 614 637 0.95 11 11 3.1 1.5e+02 2.7 1.1 1 23 643 665 643 665 0.95
Sequence Information
- Coding Sequence
- atgCAAGTAACTGGTATTCAATGGATTCTGATATCTGTGTGTTCAAAGAAGAACCGGAGAAAATACGGATATCAGGATTACAAGCAACTGGGACCGGAAGATGATCCAGCGGTAATGATGAATGGTATGAATGATGACTATGATCCAAGGGCAATGGATGGCGACAGAAACCAAACTATGCATTCATTATGCCGTCTTTGTGCAAATGTAACGGAAAAGGTGGTTTATCTCTTTAGTACTGTTGGACAAGATTTGCATTTggcaaaaaaaatcaatacaagcCTTCCAGTTACTgTTCATATTTCAGACCCCCTGCCAAAACAACTTTGTTCTGAATGTGTCTACAAAGTTAATATGTGCTACGAATTTGCAGAAATGTGTTTGATAGCCGAGGAAAAGCTCATCAATCTGATGAAAACTCAAACTTTTACTTCGCAGTGCTTAAGAAATGCCAAACCTGTACCTGAACTAGTAACTTCTGGATTTGGAGAAAATTTCAGCAGTATAACTGTTGTGGAAGGTGGTTCGGAGTCACTGACTGATGTTAGGTCTAAATTTGAgaacataaatagtattattggCAGTATTGACAATAGCCACCCAAATAATTTTACAGatgatgaatttttgttttttacttgtcCATTGTGCCCCGAAGGAACTGTTACAATCCAAGATGATAATCTTACAAATTGTGATGAACTGAATACAAACTGCAAAGTACATTCCAAAGATTTGGGAAGCAATTTGAATGTTACTGAAGAAAATTCTATAAGAGACCTAAATTCtgtggaaataaatgaaaaatcatgtGATCCTGAATACTTAAGTGTGCCTTgtgatattaatgataataattcaaGAGAATCTAATGAAGTAGATGAGAAATGGTGGAATACAAGTAACTCTGAAGTTATAGACCCTTTGAAGGAGGTTGTAATCAAAGAATGTTTAGATTATTCAAAATGTGATACTAGTACAAATGACGCTAATATTGTGTGTTGCACTTTATGCCAAGAGCCTTTTGATGATTTAAATTCATGTTTGAGCCATTCTCAGTTTCATTTCAGTGATAATAGCTATCCTTGTCCagtgtgtaatttaattttctctaccGAGTCTGAACACACGCAGCATTGTAGACAGCATGTATTAATGACAAAGAAGTTCAATCACAAAGGAAAAAGGTTGAAATGTGATGGGTGTGAAAGACGCTTTAATACTCAACGGACATTTCTGAATCACTCTTGCATCAGTTCAGAACCAAAGCAATTCCGTTGCAGTACTTGCAAAAAGGCCTACAGCACTCAAGAGAGATTGCTTTTTCATCAGAAGTTCCATGAAGGATCCCCTTCCAATCAATGTGAGCAATGTGGCAAAGAGTTTGATAATGAAGGGAGTCTGTACTATCACACTAGAATGGTTCATGTAGGTGAACGTCCCTTTGCGTGTAATTTATGTGGAAAGAGATTCTATTCAAACTCTCGCTTGGTTGCTCATAAACGTGTTCATACCGGAGAACGACCGTTCCAATGTGAAGTGTGTGGGAGACGGTTCTATGATCGAGACACATTGAAGGGACATAATGTTACTCACATGGCGATGAAGCCATTCCAATGTGACTTTTGTGGTATTTGTTGGAGTCGTAAGAGTCTGTTGAATCAGCATATTCGAACTCATCATTCCGAAGATAGTGTGTCACGTAGAGTCCAATCGTTGATACACTATTATTGCAAAATATGTGATACCACCTTTACCAGCTCCACTGATGTTCTCATGCATAGAACTACACATTGGAAAACCAATCCTGAGAACAATGACAATTTGGATTCCAATGTACATGTGTGTGAATATTGTGATGAATCATTTGCTTTAGTTACCATGCTCGTCAAACACAGGAAACAAAAGCATCCAGATGAAAAACCATACCTCTGCAGTCTTTGTGAAGTATCTTCACACACCTTGTATGAGGCGCGCTTACATCGGAACATGCATTCATCAACAAAAGATGTTAAGACAGAAGAACCAAAAGAGGATAAATCAACGAAGGGACGATATGGAGAGTAG
- Protein Sequence
- MQVTGIQWILISVCSKKNRRKYGYQDYKQLGPEDDPAVMMNGMNDDYDPRAMDGDRNQTMHSLCRLCANVTEKVVYLFSTVGQDLHLAKKINTSLPVTVHISDPLPKQLCSECVYKVNMCYEFAEMCLIAEEKLINLMKTQTFTSQCLRNAKPVPELVTSGFGENFSSITVVEGGSESLTDVRSKFENINSIIGSIDNSHPNNFTDDEFLFFTCPLCPEGTVTIQDDNLTNCDELNTNCKVHSKDLGSNLNVTEENSIRDLNSVEINEKSCDPEYLSVPCDINDNNSRESNEVDEKWWNTSNSEVIDPLKEVVIKECLDYSKCDTSTNDANIVCCTLCQEPFDDLNSCLSHSQFHFSDNSYPCPVCNLIFSTESEHTQHCRQHVLMTKKFNHKGKRLKCDGCERRFNTQRTFLNHSCISSEPKQFRCSTCKKAYSTQERLLFHQKFHEGSPSNQCEQCGKEFDNEGSLYYHTRMVHVGERPFACNLCGKRFYSNSRLVAHKRVHTGERPFQCEVCGRRFYDRDTLKGHNVTHMAMKPFQCDFCGICWSRKSLLNQHIRTHHSEDSVSRRVQSLIHYYCKICDTTFTSSTDVLMHRTTHWKTNPENNDNLDSNVHVCEYCDESFALVTMLVKHRKQKHPDEKPYLCSLCEVSSHTLYEARLHRNMHSSTKDVKTEEPKEDKSTKGRYGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -