Lko_13687-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- ZFHX3
- Assembly
- GCA_002313205.1
- Location
- NNCF01127715.1:518722-529767[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.79 37 4.6 0.3 1 20 99 118 99 122 0.84 2 15 0.21 10 6.4 0.1 1 23 138 161 138 161 0.92 3 15 0.011 0.53 10.4 1.9 2 22 294 314 294 317 0.90 4 15 0.84 40 4.5 1.6 3 23 331 354 329 354 0.88 5 15 0.011 0.54 10.4 1.7 1 23 378 400 378 400 0.97 6 15 0.0021 0.1 12.7 0.9 2 23 407 429 406 429 0.96 7 15 0.0017 0.079 13.0 3.8 1 23 539 563 539 563 0.92 8 15 0.0079 0.37 10.9 0.6 1 22 583 604 583 607 0.89 9 15 0.0011 0.05 13.7 0.2 1 23 666 690 666 690 0.93 10 15 0.16 7.5 6.8 0.2 2 21 836 855 835 856 0.93 11 15 0.39 18 5.6 1.8 2 19 982 999 981 1004 0.91 12 15 0.00017 0.0079 16.2 2.5 1 23 1609 1631 1609 1631 0.99 13 15 0.00074 0.035 14.1 0.3 1 23 1759 1781 1759 1781 0.98 14 15 0.016 0.75 10.0 0.2 2 23 1926 1948 1925 1948 0.96 15 15 0.34 16 5.8 2.4 2 22 2236 2256 2236 2259 0.88
Sequence Information
- Coding Sequence
- ATGGAACCATTCGGACAGTTAGGAAATCGAAGGACGTGTGTTCCTTCAAAACACGACCGGAAGGAACCTCCGCAGCTTGGTGTCCCGCTGCAGCAACAACAGTTGAAGGTGACGGCAACGGGACGCGACGCTGTGAAGGATGCGACGGGGCGGGAGAGCGAGAACGCCCCGGGCGACGATGGCAATGCTGACGACCAGCCGGCGCCACCCGCAACACCTAGCCACGCATCACCCCGAGGCCGCGATGAGTCGGGTGCCGGCGGCTCGGCCGCCTGCTCGCCCTCCGCCAACCAACACATGTGCCCCTATTGCAACTACAGCAGCAGCTCAGAAATGCGCGTACAGGCTCATGTGGTTGCGCAGCATTCGGGCTCTGAGCCATCGCCACCCTCCGCATCGCCTGGACGCGAGTTCTTGTGTCCTCTCTGCCAAGACAGCTTCCGCGAGCGCGCGCCGCTGGAGCGCCATGTTATGCAGATCCATAGTGTCAATTCGGAAGGGTTGCAGCGCCTGCTGCTGCTGGTGGACCAGTCTCACTGGCTCAACTCGGTTCGGCGCTCGGCTCCTAGCACGCCGCAGCCTGCAGCTGCGACAGCTACAACGGCGTCAGCGGCGCTGCAGCATCAGCAGCAGCAGGCTGTGCGGCCCCCACTCCAGCAGCAGACGCACGCGTTCCAGTCGCCTCCGCAGCAGCAGACACCGTTCGCCCAGATGGTGAGTCCTGCGTCCGCATGCAGCTCGGGCGCGTCGTCAGCCGGCGCCAAGGAGGTGGACGCTGGCGTCAAGGGCGACGCGGGCTTTGGCGGCGGCGACGAGCGCACCGACGCCGACCGTCCCGACTTCTCACCATCTCCCGACGATCAGGTGGATGACGAGAACCGTTGCCAAGCATGTTTCAAAACTTTCAAGAACCTCGACGATTTGTGCGCGCATCAGAACGAGTCGGGCCATCTCGAACTGAAGCAGACGCCCAACGGTCCGGGATATCTGTGCTGGAAGAAAGGATGTAACCAGTACTTTCAGTCTGCTCATAGTCTTCAGATGCACTTTCGAGAGATCCATTCACGCACTGGAGGAACAACTTCAGTGCTGGGGCAGAACATCGCAGTCTCAGAGAAACACGTGTACAAATATCGTTGCAATCAGTGCAGTCTGGCGTTTAAAACAATGGAGAAACTTCAATTACATTCGCAGTATCATATCATTCGGGACGCGACCAAGTGCGTGATCTGTGGGCGTAGTTTCCGATCAGTGTTGGCATTGCACAAACATGTGGAGACATCGCACACAGAGCTGTCAGAGGAGGAGCTGGCTGCGTACAAACAAAGCCTTCTCAGCAATCCTCTCTTACTGGCTGGGCTGAGTGGACAAGTGCTAGACCCTGCTACCAATGAGCTGCTCCGCAAGGAGACGCTGAAGATAGATGTAGACGAGACCGCGGAGCTCGACGATTCTGCAGGCAAGGAGACACCAGGTCCTGAAGACATGTCCGCATCGGCTGCTGATGGCGACAACAGCGACGATTCTCTCATGTACAAAGAGCAGCAGTTTCTAGAAGACTACCTCAATAGCCAGGCCATCGCCGAGGACAGCTATAACGACCCTAATCGCAAGTATAAATGCCATCGATGCAAAGTCGCGTTTACGAGGCAGAGCTATCTGTCCAGCCATAACAAAACACTTCTGCATCGCAAAGGAGAGAAGCTTAGCTATCCCATGGAAAAATATCTGGACCCAAACCGTCCGTATAAGTGCGATGTTTGTAAAGAGTCGTTCACACAAAAGAATATTCTTTTAGTACACTACAATTCCGTAAGTCATCTCCATAAGTTGAAGCGTGCCATGCAAGAGCAGCAGCAGAACAACAACAATAGTTCAACGGGCCCATCTTCTCACGCAGCTTCAAGCGCAGCGGCGGCATTGGCATCAAATTTGGGTGTCACACCGCCCTCTACACCTAAAATGACCATCGTAGAAGAGGATGATAAAAAGCCCTACAAGTGTAATATATGTAAGGTGGCGTACAGTCAAGGCTCCACCCTTGATATTCACATGCGTTCAGTTCTGCATCAAACACGAGCATCTAAACTCCAAGACTTGGCCCTTACTGGTCAGATTGACCTGAGTAAACCTCTCATTGAACAACCAGAACCACACAAACATCAAGAACAACACAAGAAAGTTCTCCACGATATACTGGGATCAGCTCAAAAGCAGCCACCAATTAGCTCAATAGCTGTGAGTGGAAGCTGCAATACTATCATAACTTCGTCATCGTGTCAATTACCTTTAACAAATCAGGGATCTTCCCCGGTAGCTGCCAATCTCGCGATATCTCAGTCGTCGACGACTGCCACATCCCCGGCCGTGACTCCAGTTCCTATTAGCATTTCTAATTCGTCTACCACTAGTACAAGTAGCACGTTGACCACGCACTATAGTGGCAACACAATTCAAACACCACAATCACCGCAGCAACAGCACAGCCAACAACACGGCATGCTGTCGTGCCAGCGTTGTAGCGCGCTGTTCGTTAATCAGGAGCAACTGAATACTCATCAGCAACTGTACTGCCTATTCAGTAGCCCCGTCCCAATGTTTACGCCCATCTCGTCTGCAGGGCAAACATGTGGAACGGGCATCACCTCGCAGCAGCTCGCCAGCAAGACTCCTCCGCCCATGCAGGACGACCATATGACGCGGCTCTCTCTCCCGAACAAGAAATCCTCTCAAGTCTACAAGCATTTGCTGGAGAGCTTTGGATTTGACCTAGTAATGCAATTCAACGAAAACCATCAGAGACGACAAAGACGGGAGCGTGAGGAAGAAGAAATGGCGCAATCTCTACCCACCACGACGATGCAGATAAATGATGAACCCGAAGAAGTAGCAATTAAATGCGACGAAGAAACCGAACAAGACTTACCCGAAGTGTCGAAATCCGTTTGCCAGCactgtaaaaaagaattttctagCGTTTGGGTGCTCAAAGCGCATTGTGAAGAAGTGCATAGAGATTTGGTTCCCCCGGAGTTTTTAGAGAAGTACGCGCAACAGTTCAAATCGGAGTATGAGAAAAAGTCGGTCGTGATTACATCAACAACCGCGAGCACGCCACCGTCGGTCGTCGTTAGTATTCCTAGTCATCACACTTCCGCGACACCTGCTGCGTCAGCCACAGAGTCCATACCTGCGACGCTGACAGCGTCCTTGGCTGCGGTCGTGGGCGGTCTGGGCAGCGGACATAGTGGCGCCCCTAACGCAGCCGCCAGTGCCAACCTTTCGATGAACCTGGCGCAACAAATGAACGAGATGCAAGCTGCGCTAAACGTGATGGCGGCTTCTCAGCTGCAGCAACAACTGCAACAGTTCAACCCGATGGTGATGAGCATGGCGGGGCTGGGCATGGGGCTTCCGCTGGGCCTCAACATGAACGCCCTGGCGGCGATGAACCTGCAACCGCCGCTCGTACCCATGATGATGCCTCCGCCGCCGTTCGACCCATTGGGGCTGGCGCAAGCGCAGAACCCGCTCTTCTCCCCGCAGGCCGCGGCAGCCGCTGCTTCCATGGACCCGCTCCTCGCCAAACAGCAGCACATGCTACAGCAACAGCAGGCGGTATCGGCTGCTCAACAAAAACGAGCCCGGACGAGGATAACCGATGAACAACTGAAGATTCTTCGTGGCCATTTTGATATAAACAATTCTCCTTCGGAAGATCAGATACACGAAATGGCTAGTCAAAGTGGCCTCCCTCCAAAAGTTATCAAACATTGGTTCAGAAATACCCTCTTCAAAGAAAGACAAAGGAATAAAGACTCTCCGTACAATTTCAATAATCCCCCTTCGACTACATTAAATTTGGAGGAGTACGAGAAAACTGGCGAAGCGAAAGTGATGCCTTTGAATCCCACTCCCGACGAACAAAACACACCTAAAGAAGTGACCCCCGTGTCCACCCCCTCAGAAGTCGCTGGCACATCGCCTGTCAACAAGAGAAAACATTCGACTTCACAACCATTCCCACAGCCCCCAGAAATTAAGACGGAACCCTCTGAcgcaattttagacaatcaagaTCAGAAATACAATAATGCTTTCTCCGAATCTGAACTAGTGCGAAAAGACGTGGAGCTCGTGGATCAGAAACCACCACTTCACACCTTGCATCCACCACCGAGCCCAGTGACATCTGTAGGCGGTTCCACGAGCAGCAACAACGATCAGAACGTACGTACCACATCACCTGGCACGCTCACACTCACGTCGATTATCTCATCCCAATTAGGCTCTAATTCAATGACTACTACGAATCCGCTTATGAACACAGCGGCGACCTCTCCATCTAATAGTATCCTCCCGTCAAAATTGACCCCCACAAGCTTCGCCCCTCCAAATCAAGTGTCCAACCAGGCGCACTCGCTTCCTCTTGCGCCGTCGTCGAGAAGTGTGAGTCCGGGACGCTCGTGCAACAGTAACTCTTCAGACGGGTTCAGCCACGGCCCTGTCTCAGCCTCTTGCGTCGGCAACGCTGGTAATAACTCTTCAGGAAGCTCGTCGGGTAAACGTGCGAATCGCACTCGCTTTACGGATTATCAGATAAAAGTACTTCaggaatttttcgaaaataacgCCTACCCAAAAGATGATGATCTCGAGTATTTGTCGAAATTATTGACCTTAAGCCCGAGAGTAATCGTGGTGTGGTTTCAAAACGCGCGTCAGAAGGCGAGGAAGGTTTACGAGAATCAACCCCCTGTAGATGCTTCCCCAGGTGTGGATGAGGGAGGAGCGAACAGGTTTCAGAGAACGCCAGGTCTGAATTACCAGTGCAAAAAGTGTCTGCTCGTGTTTCAGCGCTACTACGAGCTCATTAGACATCAGAAGACCCATTGTTTTAAAGAGGAAGATGCCAAGAGATCAGCTCAAGCTCAGGCAGCCGCCGCTCAGATCGCAGCCGTTTTGTCATCAGAAGACTCCAACTCCAGCACCATCGTGGAGTCGAACCAGCAGCAACAAGCAACGGGAGCAGGAGTCCTGACGGTGAGTGGAGGGCCACAGGTTTCGGCACCGCAGCTGACGGCCGGCGCTTCCCCGGGCGCACTGTTGGCCACTGCCCCGACTTCCACGCCGCTCGCTGCCAGCCCGTCGGCCGTGCAGTCGAGTGGCCCTGGTGCTCCGCGCGTGCTGTTCCCCCCATCGCCCGCGCCTTCCGCCCCACCCACCGCCCCACCCACACCTGCACGGGCACAGGACGACACCAAAGAGGGCACTTTTCAGTGCGACAAATGCAACCTCGTCTTCCCTCGTTTCGACCTCTGGAGAGAACACCAACTGGTGCACATCATGAATCCCAACCTTTTTCCCACATACCCTCCAGACAGCCCGTTCGGCATCCTACAGCAGCACGCGCAGATCCAGCAGCAGCAAATGACAGCGTTAGGCGTGGCGGAACTCCAGGTGAGCGCCGCTAATGCCCACCCGCTCTCGGCGATTCTACCCACCAATAAGCGCAAATTCGATGATTACGACGACGGAAATGATCGTGATTCTGAGCACCCAAAGGACAAACGCTTGCGCACTACCATCCTTCCCGAACAGTTGGATTACTTGTACCAAAAGTACCAATTGGAAAGCAATCCCTCGCGGAAGATGCTTGAGAACATCGCTAAGGAAGTTGGTCTCAAGAAGCGCGTTGTTCAGGTGTGGTTCCAGAATACGCGCGCCCGCGAACGCAAGGGCCAATTTCGCGCGCACGCGCAAGTTATCAACAAACGTTGTCCATTCTGCCCAGCACTTTTCAAAGTCAAATCTGCGTTGGAGTCTCATTTAGTTACGAAACACGCTGATCAATGCACTCGAGGTGAAATCAACATCGATGCGCTGCCCGACGAGGACGCCAGTTTAGAAGCGTCTCCGTCCTTCAATTCTCCGCATATGAGTGACTCCGCGAAGGCCCAAAGCAACTTCAATCCCAGTCCGCAAACCCCCAATATGATGCCTCCTCTATTTCCTCCCTTCCAGAGTGAAATCGAAAACTCCATCATCAAGAAATATTACGAGGAGTCGATGAAGAGGTATATTAATGAGCTGCAGGCCCACCACGCAGCGCAGAACGGTGGTGTGAGCGCCAAGGATGTCCTGCATGTGCCCACCGACCTGAGCATGAAAATTAAGCAGGAAGTAGCGACCGGCAGCGACGTCTCCTCCAATGTAGGAGACGCGCCGCTGGATCTCAGCAAGCCGGTTGATCTCAGCCGCCCCATGAAATTGTCTATGGAGAGTGAAGCGCGGGCCGAATCCGGTCCCTTGACGGATCTCAGTGAGAAGAGCTTGGGCTGCGAAGATGACAGCACATCCGAGACCACGGACAACATGGACGGCGACGAAAGCAATCCCACCTCCCCGGCTTCGAGCACTCAGAGTGGCCAGCAGCGCCCGCTGCCTCCTGCTGGTGTGAAGCGATTTCGCACGCAAATGAGTAGTCTGCAAGTGAAGGTAATGAAATCGCTCTTCTCCGACTACAAGACTCCCACCATGGCGGAGTGCGAGATGCTCGGTCGCGAGATCGGCTTACCGAAGCGCGTTGTGCAGGTCTGGTTTCAAAACGCACGCGCCAAGGAGAAGAAGAACAAGTTAGCTCTCCAGAAGGCGCTCGGAGGCCCCGACGTGCCCGTGTCCCTGCCCGAAAGCCGCCCGCCCGAGGAATGCAAGATCTGTCAGTTCAAGTACTCGCACAAGTACTCCATCCAAGACCACGTCTTTACCAAACTGCACATCGACTGCGTGAAGACGCACATCGAGAGTGGGAAAGCAGACCTGTCGGGCAACACGAGTGACGGCGGAGGCAGTTGCAGCGGAGAGTTCACGGTGCCCCCTGTGCCGGGCTCGTCGCTGGGCGACGCGGCGAGTGCGGGGGGCGGCGTGGGGGCGGCGCCGACGCCCCCGCAGACCATGCAAACTCAGTCCTCGCAGCAGCACCTGGCCCAGCTGCAGATGCTGCAGATGGCGGCGGCCAGCGGCCTGGCTTTGCCCAACTCGCTCTCGGCGCAGACAGTCGCCGTGGCGGCCGCCTCGGTGTCCGGCTCAGCGTCCGGCGCGGACTCCAAAGACAGTGGCGGCGGCACGgctggaggcggcggcggcggcggtgacggcAACGGCGTGGGTGcaggcaacggcggcggcggtggaggaggcAACGGCGGCGCGGGGCCAGGCGCCTCGGCAGGCCCCGCCAAATCTCCCGCCCCCGGCGGCGTACCCGGCTCCGAAGACATGGCCCTGCTCCACCAGCTATATGGCCTAGGATTGGCCGGCTTCTCTGGGGGCGTCCAGGGCAATATGTTTCTTCATCCTGCCATGTTTTCCGCCGCTGGTGAGTAA
- Protein Sequence
- MEPFGQLGNRRTCVPSKHDRKEPPQLGVPLQQQQLKVTATGRDAVKDATGRESENAPGDDGNADDQPAPPATPSHASPRGRDESGAGGSAACSPSANQHMCPYCNYSSSSEMRVQAHVVAQHSGSEPSPPSASPGREFLCPLCQDSFRERAPLERHVMQIHSVNSEGLQRLLLLVDQSHWLNSVRRSAPSTPQPAAATATTASAALQHQQQQAVRPPLQQQTHAFQSPPQQQTPFAQMVSPASACSSGASSAGAKEVDAGVKGDAGFGGGDERTDADRPDFSPSPDDQVDDENRCQACFKTFKNLDDLCAHQNESGHLELKQTPNGPGYLCWKKGCNQYFQSAHSLQMHFREIHSRTGGTTSVLGQNIAVSEKHVYKYRCNQCSLAFKTMEKLQLHSQYHIIRDATKCVICGRSFRSVLALHKHVETSHTELSEEELAAYKQSLLSNPLLLAGLSGQVLDPATNELLRKETLKIDVDETAELDDSAGKETPGPEDMSASAADGDNSDDSLMYKEQQFLEDYLNSQAIAEDSYNDPNRKYKCHRCKVAFTRQSYLSSHNKTLLHRKGEKLSYPMEKYLDPNRPYKCDVCKESFTQKNILLVHYNSVSHLHKLKRAMQEQQQNNNNSSTGPSSHAASSAAAALASNLGVTPPSTPKMTIVEEDDKKPYKCNICKVAYSQGSTLDIHMRSVLHQTRASKLQDLALTGQIDLSKPLIEQPEPHKHQEQHKKVLHDILGSAQKQPPISSIAVSGSCNTIITSSSCQLPLTNQGSSPVAANLAISQSSTTATSPAVTPVPISISNSSTTSTSSTLTTHYSGNTIQTPQSPQQQHSQQHGMLSCQRCSALFVNQEQLNTHQQLYCLFSSPVPMFTPISSAGQTCGTGITSQQLASKTPPPMQDDHMTRLSLPNKKSSQVYKHLLESFGFDLVMQFNENHQRRQRREREEEEMAQSLPTTTMQINDEPEEVAIKCDEETEQDLPEVSKSVCQHCKKEFSSVWVLKAHCEEVHRDLVPPEFLEKYAQQFKSEYEKKSVVITSTTASTPPSVVVSIPSHHTSATPAASATESIPATLTASLAAVVGGLGSGHSGAPNAAASANLSMNLAQQMNEMQAALNVMAASQLQQQLQQFNPMVMSMAGLGMGLPLGLNMNALAAMNLQPPLVPMMMPPPPFDPLGLAQAQNPLFSPQAAAAAASMDPLLAKQQHMLQQQQAVSAAQQKRARTRITDEQLKILRGHFDINNSPSEDQIHEMASQSGLPPKVIKHWFRNTLFKERQRNKDSPYNFNNPPSTTLNLEEYEKTGEAKVMPLNPTPDEQNTPKEVTPVSTPSEVAGTSPVNKRKHSTSQPFPQPPEIKTEPSDAILDNQDQKYNNAFSESELVRKDVELVDQKPPLHTLHPPPSPVTSVGGSTSSNNDQNVRTTSPGTLTLTSIISSQLGSNSMTTTNPLMNTAATSPSNSILPSKLTPTSFAPPNQVSNQAHSLPLAPSSRSVSPGRSCNSNSSDGFSHGPVSASCVGNAGNNSSGSSSGKRANRTRFTDYQIKVLQEFFENNAYPKDDDLEYLSKLLTLSPRVIVVWFQNARQKARKVYENQPPVDASPGVDEGGANRFQRTPGLNYQCKKCLLVFQRYYELIRHQKTHCFKEEDAKRSAQAQAAAAQIAAVLSSEDSNSSTIVESNQQQQATGAGVLTVSGGPQVSAPQLTAGASPGALLATAPTSTPLAASPSAVQSSGPGAPRVLFPPSPAPSAPPTAPPTPARAQDDTKEGTFQCDKCNLVFPRFDLWREHQLVHIMNPNLFPTYPPDSPFGILQQHAQIQQQQMTALGVAELQVSAANAHPLSAILPTNKRKFDDYDDGNDRDSEHPKDKRLRTTILPEQLDYLYQKYQLESNPSRKMLENIAKEVGLKKRVVQVWFQNTRARERKGQFRAHAQVINKRCPFCPALFKVKSALESHLVTKHADQCTRGEINIDALPDEDASLEASPSFNSPHMSDSAKAQSNFNPSPQTPNMMPPLFPPFQSEIENSIIKKYYEESMKRYINELQAHHAAQNGGVSAKDVLHVPTDLSMKIKQEVATGSDVSSNVGDAPLDLSKPVDLSRPMKLSMESEARAESGPLTDLSEKSLGCEDDSTSETTDNMDGDESNPTSPASSTQSGQQRPLPPAGVKRFRTQMSSLQVKVMKSLFSDYKTPTMAECEMLGREIGLPKRVVQVWFQNARAKEKKNKLALQKALGGPDVPVSLPESRPPEECKICQFKYSHKYSIQDHVFTKLHIDCVKTHIESGKADLSGNTSDGGGSCSGEFTVPPVPGSSLGDAASAGGGVGAAPTPPQTMQTQSSQQHLAQLQMLQMAAASGLALPNSLSAQTVAVAAASVSGSASGADSKDSGGGTAGGGGGGGDGNGVGAGNGGGGGGGNGGAGPGASAGPAKSPAPGGVPGSEDMALLHQLYGLGLAGFSGGVQGNMFLHPAMFSAAGE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00872133;
- 90% Identity
- iTF_00872133;
- 80% Identity
- iTF_00872133;