Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01126816.1:478303-494462[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0034 0.16 12.1 2.8 2 23 336 358 335 358 0.89

2 8 0.0002 0.0096 15.9 2.9 1 23 391 413 391 413 0.98

3 8 9.5e-05 0.0045 16.9 0.2 1 23 452 475 452 475 0.95

4 8 0.0005 0.024 14.7 0.7 1 23 481 503 481 503 0.97

5 8 4.8e-06 0.00023 21.0 4.8 1 23 509 531 509 531 0.99

6 8 0.00026 0.012 15.6 0.9 1 23 536 558 536 558 0.98

7 8 2.7e-06 0.00013 21.8 2.9 1 23 564 586 564 586 0.98

8 8 0.0067 0.31 11.1 3.6 1 23 592 615 592 615 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0034	0.16	12.1	2.8	2	23	336	358	335	358	0.89
2	8	0.0002	0.0096	15.9	2.9	1	23	391	413	391	413	0.98
3	8	9.5e-05	0.0045	16.9	0.2	1	23	452	475	452	475	0.95
4	8	0.0005	0.024	14.7	0.7	1	23	481	503	481	503	0.97
5	8	4.8e-06	0.00023	21.0	4.8	1	23	509	531	509	531	0.99
6	8	0.00026	0.012	15.6	0.9	1	23	536	558	536	558	0.98
7	8	2.7e-06	0.00013	21.8	2.9	1	23	564	586	564	586	0.98
8	8	0.0067	0.31	11.1	3.6	1	23	592	615	592	615	0.98

Sequence Information

Coding Sequence: ATGTCTCCATACCACATCATATATCATGACCGCAACGTGATTACCGAATATCCTTGTTTGCAGCCGCTATGCATCGCCGTTCCCCGCCTCAAAGAAGAAGCGGAGCAGATGTCCATCGAAGTGGACCCGTTCCTTGTAAGTGTGTCCACAGCGGTGACGTCAACAGCGGGTCCAGAGCGTCGCGGAACTTCTCGTGGTGGACCCGGAAGGCGGGCTCGCGGTCGAGGGCGGTGTCGGGGAGGTTCTCGCGGTCGTGGACGGCGCAGGGCTGCGTTGGCGGCAGCGGCGGGGCCAGCTGCTCCCGCGAGAAGGATGCGCGGCGGCCCGGGACGGCGCGCAAGTTACCGCGCCAACAGTCGATTGCAAGCACAATTGCGAGAGGCAGAAGAAGATTCGGATTCATCACTGCCATCTCCTGAACCGTTACACAAGGTAAGCTACgttaagaagaaaaatggaataaatggaaatggtgagagaagagaaagaaagGTGAAGATGGAACAAACTATGGAGAGTGAAGTGGGGGAAGAAGACGATGATGAGTTGTCTGAAGGATCGACGGAGACGATGCCGTCCGAGAAATCAGCGAGGAAGCGTCGTGGCTGCGGAAGCATACCTGAAACTGACAAGGGACTCGTGGGGGCAGCGAAACGTAAGGCGCAAACACCGCGTGTCCACAAGCACAAGTCAGCGGGGGAGGGCGAGACTTCTGCAGACGGCGAACCAGGAGTCGACCATGCGTCCATAGACCCTTCGGCGTCACCGTCGTCTCCAGAGACGTCGACTGGAGCTACGGACACCACAGTCGTTACATCGGTCTCCAACGGCTCCGGGGCGGATGTTACGACGACGACAGCTGCAACTAGGTTGGATAGTGTGAAGAATGATCCCAACCCTTTTGATGATGATGGCTTTGCTGACTATGATTCCCCTGATGAGGTAGAAAAACCCCAGACTACTGAGTTGCCTGATCACAGTGACCAGCCTTCCATCTTCAGGTGGGAGTGCCATGTATGTAAGGAAGTGTTTCGAAATTGGAATTCCCTGTCTGTTCACTGTCGACAAACACACAATGTACCTGCTCAGGTTGTATGCCTGTGTGCTAAAGTTCTTGCCAGTAGAGCCTCCATTATCAAGCACCGCCTTAAACATACAAATGCCTACAAGTAcaaGTGTGATAAATGTGATAAGGCCTTTCATCGGAAGTCTTTATTTGATCTTCATGTTCTGAGTCATGTGCCAAAGGAAGAACAGCCATATGTGTGTTGTAAGTGCGCACGACGCTTCCATTGTGAGGCACTTTTGCGTCACCATGAGCGGGTTCATCTTCCCCGTGAGGAGAGACTTGTGTACCCATGTTCTGTCTGTGCCAAGAAGTTTAGTAGTCGTTCAAATGTATCTGCTCATTTAAAAGCTGTACACTTTGGTGAGAGACCATTTGTTTGTGATCAATGTGGCCATAGTTTTACCTCAAAAGGAATATTGCAGGAGCACCTTACAATCCATAGTGATGAAACTCCATTCAAATGTACTCAATGTAAAAAAAGCTTCAAGACAAAATATCGGTTGAAAATCCACATGGATACACATCGTGAAACTCCTTATCAGTGCCCTATATGTCCACATCAGCTATCTACAAGAAGAACACTGCGTATGCACTTACTTGTACATAAAGATGTGAAAGCATACCAATGTGCTACCTGTGGGAAAGCATTCAAGCGGTCCAAAGATCTCAAgAATCATCATAATCTGCACACAGGTGTACGCCCATACACTTGTACTTTCTGTCCTCGAACCTTTGCCAATGGCTCCAATTGCCGTGCACACAAGCGAAAAATGCATCCTGAAGAGCTTCGAGCTTATGAAGCGCAACTGGCGGCAGCAGCGGAAGCAGGTGAAGCTCCCCCTCCACCACCGCCAAGGGCCATTGCTCCTCCACCCCCAGGCTCTGGCCAGCAGCAACATGTGAGAATGCTTTACCTTATTCAACAACCAGTGGAATCCATAACTCACCAGCAGTCAACAGCTGTTCCAGTTGCACCAACAGGCAGCCCCATTCAACCACTGACACATACACCTATCGATGTACTGCATCCATCCTCTGATCTAAAACCACCTCCTGATCTCAAGCCTCCATCCGCCATTCCTCACCCTCCACCACCACCGTGCACCAACTATGAGCGCCATTCTATGTATGATAGCAGTGGAGGCCTGAAGGTATCAGCATCAGCTACACCTGTTGTGGCAGCAACAGCTTCACGTCAGCATGAGTATGCTCCATCCCCCTCGCAAATTCCCCGCATACTACCCCCTCATTTGTCAGACCTAGCTGGTGTTGCGCGACTGGGTGAGAATGGACTGTGTCGCTCCAACCCACATGCTGCATCAGAACTAGAGGCAGCAGTGGGTAGCAGGGTAATGGCAATAAATCTCAATGTCCGTCGTGGGAACACTGGTGCCCCCGGGGATATGATCAGTGGACATGTTGGCACCTTAGCACCATTGAATCTCAATGTATCTGAGATGCAACATGCAAACCgtcagcagcaacaacaacaccAACACCAACACCATACAGGGATGAGCGAAGGAATGTTATCAGAACTGGAAGATGGTGGATATCTCAGCAGCCAACGACGCACAGTGGATTCCTTTGGAGGAGGACGCTCCCACATTGGACTAGCAGCGGCAGGGCTTGGGGCTCTAACAGCAAGCGGGTTTGCAGCAGGGTTACCTGTGCATCGGCAGCAGCCACAACAGCAGCATCAGCAACACCAGCAACCTCAGCAACAAGGGATGACGTTAAACCACCGTGTTGCTGGGATGCACCAAGCCACTCAGCACTCTGCGGACCCACAGGCATATCATTTGTATCAACACCATGGCGAGTCAATGCCATCAGCTGTTGCTGCAGCAATTGCCCACTCTACCGGAGGTATGTCTGTTCCTGCTTTCCCAGGAAACCCTTACATTCATCACAACATGGGCTACAGTCGAGGAGGGAACACTATGTAG
Protein Sequence: MSPYHIIYHDRNVITEYPCLQPLCIAVPRLKEEAEQMSIEVDPFLVSVSTAVTSTAGPERRGTSRGGPGRRARGRGRCRGGSRGRGRRRAALAAAAGPAAPARRMRGGPGRRASYRANSRLQAQLREAEEDSDSSLPSPEPLHKVSYVKKKNGINGNGERRERKVKMEQTMESEVGEEDDDELSEGSTETMPSEKSARKRRGCGSIPETDKGLVGAAKRKAQTPRVHKHKSAGEGETSADGEPGVDHASIDPSASPSSPETSTGATDTTVVTSVSNGSGADVTTTTAATRLDSVKNDPNPFDDDGFADYDSPDEVEKPQTTELPDHSDQPSIFRWECHVCKEVFRNWNSLSVHCRQTHNVPAQVVCLCAKVLASRASIIKHRLKHTNAYKYKCDKCDKAFHRKSLFDLHVLSHVPKEEQPYVCCKCARRFHCEALLRHHERVHLPREERLVYPCSVCAKKFSSRSNVSAHLKAVHFGERPFVCDQCGHSFTSKGILQEHLTIHSDETPFKCTQCKKSFKTKYRLKIHMDTHRETPYQCPICPHQLSTRRTLRMHLLVHKDVKAYQCATCGKAFKRSKDLKNHHNLHTGVRPYTCTFCPRTFANGSNCRAHKRKMHPEELRAYEAQLAAAAEAGEAPPPPPPRAIAPPPPGSGQQQHVRMLYLIQQPVESITHQQSTAVPVAPTGSPIQPLTHTPIDVLHPSSDLKPPPDLKPPSAIPHPPPPPCTNYERHSMYDSSGGLKVSASATPVVAATASRQHEYAPSPSQIPRILPPHLSDLAGVARLGENGLCRSNPHAASELEAAVGSRVMAINLNVRRGNTGAPGDMISGHVGTLAPLNLNVSEMQHANRQQQQQHQHQHHTGMSEGMLSELEDGGYLSSQRRTVDSFGGGRSHIGLAAAGLGALTASGFAAGLPVHRQQPQQQHQQHQQPQQQGMTLNHRVAGMHQATQHSADPQAYHLYQHHGESMPSAVAAAIAHSTGGMSVPAFPGNPYIHHNMGYSRGGNTM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -