Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01127328.1:63171-71331[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.029 1.3 9.2 0.7 3 23 21 42 20 42 0.91

2 12 0.049 2.3 8.4 7.2 1 23 51 73 51 73 0.97

3 12 0.79 37 4.6 1.5 2 23 79 100 78 100 0.96

4 12 0.00016 0.0077 16.2 1.2 2 23 107 128 106 128 0.96

5 12 5.9e-05 0.0028 17.6 4.0 1 23 131 154 131 154 0.98

6 12 0.0012 0.059 13.4 0.6 1 23 163 185 163 185 0.98

7 12 0.00047 0.022 14.8 3.1 1 23 191 214 191 214 0.96

8 12 3.1e-05 0.0015 18.5 1.1 2 23 254 276 253 276 0.95

9 12 7.8 3.7e+02 1.5 0.0 10 23 303 317 300 317 0.80

10 12 0.017 0.8 9.9 0.0 1 23 326 349 326 349 0.94

11 12 4e-05 0.0019 18.1 0.1 1 23 355 377 355 377 0.98

12 12 5.2e-05 0.0025 17.8 3.3 1 23 383 406 383 406 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.029	1.3	9.2	0.7	3	23	21	42	20	42	0.91
2	12	0.049	2.3	8.4	7.2	1	23	51	73	51	73	0.97
3	12	0.79	37	4.6	1.5	2	23	79	100	78	100	0.96
4	12	0.00016	0.0077	16.2	1.2	2	23	107	128	106	128	0.96
5	12	5.9e-05	0.0028	17.6	4.0	1	23	131	154	131	154	0.98
6	12	0.0012	0.059	13.4	0.6	1	23	163	185	163	185	0.98
7	12	0.00047	0.022	14.8	3.1	1	23	191	214	191	214	0.96
8	12	3.1e-05	0.0015	18.5	1.1	2	23	254	276	253	276	0.95
9	12	7.8	3.7e+02	1.5	0.0	10	23	303	317	300	317	0.80
10	12	0.017	0.8	9.9	0.0	1	23	326	349	326	349	0.94
11	12	4e-05	0.0019	18.1	0.1	1	23	355	377	355	377	0.98
12	12	5.2e-05	0.0025	17.8	3.3	1	23	383	406	383	406	0.93

Sequence Information

Coding Sequence: ATGACTTTCCGAGCTGAAAGACACTTCATCAAACATGTGGAAGGGCATAAGAGAAATAACTGCAAACATTGTAGTGCACTATTTACAAACAGAAAGTACTTAGTTGCTCATGTAGCCGAAGAACATAAGTTGAAGCTACCAGTGGCAATACACCAGTGTAGATTTTGTGATAAAACtttcaagaagagaaaaattcttttcaaacattATAAGGAGCATGTGAATGATCAGTGGGTTTGTGAAACTTGTGGAAATTTTTCTAAAACCAAAGAAGAACATACAGCTCATCAGTCAAAGCatagagagaagaaaatttggacATGTGAGCGTTGTAAAGAGTCTTTTAGTCGTAGACAGCAGTATTTAGTTCATATGAAGGACCATGAAAAGTACCAGTGTAAGGATTGTGACGAATGCTTTGCTtccaaaaacaagttttttgaCCACAGACAAACAGTTCACAACGTGCGTTGTGTGGAAAGAAGACATCAGTGCTCGGAATGTGGACAGTGGTTTCCTCGTCCTAGGTTATTGATGTTGCATTTTCGGATTCACACAgGAGAGAAACCTCACGAGTGCGCGCATTGCGGCAAACGCTTTCACACACCGCGTGGCTACGCCCGGCACCTTGTGACAGCGCATGCGCCGCCTGCGTCCAAAGAGGGAGGAGAGGACATCGCGGGCGATCCAACGCAGCAACAGGACGACGGTTCCACCCCCGCCGCCGGGAGCGCTCCGCCGCCCCCGCGACGACAGGTGCCTTGCCCCGAGTGCGAGCAAGTGTTTTCGTCGAAACACTGTTTGGAGCGCCATGTGCTGCGCGCGCATCGCCGTCCCGGGGACTTGCGCCATCTCTGCAGTGAATGCTCTCTGTCCTTCACGTGCAAGATCCCGAAAGCGACATGTTGTGTTTTGCAGGAGAACTTGAAGCGCCACGAGCAGTTGGTGCACGGGGACGAGCACTCTGCACTCCGTTTCGTGTGCGATCGCTGCGGCGTGTCGTTGCGTTCGTTGAACGCACTCAAGGACCACGCTGCGTCCGTGCACGAGCATTCGCGAGCCTTCGTGTGCGGCGTGTGCGGAGCCGCCTTCTTGCGGAACAGTGACCTTACCCGCCACATGACGTCGCATTCGGAGGCTCGACCGCACGCGTGTCGAACGTGCGGGCAGGCGTACAAGCGCTCCTCGCACTTGCGTCGCCATCGAGCCTCCGCTCACGGGGATGTCGGTGGCGACTCGCGTTCTGCAGGCAAGTACAGGCGAGCGAACGGAGGGTCTGGTTCTGCGTCTCAAAAGCCCTCGTCGTCTCCATCGTCCCCTCCCGCTGGATCACAACCCTCGCCCCGTGCCCCCGCACCGACCCCCTCGCCGCAGGACGACACCATCTTGAAACTGGCGCTGTCCAAAGAGCGAGAGGGTGACCCCGACGACCCCGAACCGGCGTCTCCTTCGCCCTTTCCTGGAAACATCCTACATACCATCGTGTCTTACAATGTGGGTGGTGGCGAAGGGGGAGAAGGAAACTTCCCTTCCACAACCCTGTCTTCAGACACGAGTGAATCGCAGCTGGTGTTCACTACGTCTGTCCCCGTGTCCTCCATAAACATCGACCAGTCGCACACGGTGCTCACTCTCACGTTTGATCCCTTGATGGAATCGGACGCCAGCGACTTGAAGCTGGACGCGAGTTTCCAATCGGAGAAGAATGCGGCTCACAGACAAGAGGAGTCGTTGTTGTTAGATCCTACTGTTTCTTCTCACTTGCCTTTGGATTGTATGACTGATTCCTTGTATATTCCCACAGTTTCGTTGGAACAGCCTTCCACACTAATCTCTTCTGCAGATACCGTATTGACGAGTAGTTGTGTAATGCGTAAGACTGAAGATGCTACTCTAGGAAGTACTCTCATACAGTCCAATGACACATCCACTCTAGGCAATAATTCTACTCTCTTTGGCTCTGTAGATGGGGCATTTGGCTCACTGACCAATGCTGAGGTTCTTCTTAATATGCAGTCTCATATGGATACTTTATCTAACACTTTGAACATCAGTGTTTCAGATTGTGAATCCTTACTTTCTTCTCAGAACACTCATAGCCAGACATCTCCTTCAATGATATTAACTCAAGAGTCTGATGAATCTATTGGTCTGGATGGTGCCAACACTATCGCTATCCTACCTGATTTTACCCAATTacccaatttttcttttctcaatgtttaA
Protein Sequence: MTFRAERHFIKHVEGHKRNNCKHCSALFTNRKYLVAHVAEEHKLKLPVAIHQCRFCDKTFKKRKILFKHYKEHVNDQWVCETCGNFSKTKEEHTAHQSKHREKKIWTCERCKESFSRRQQYLVHMKDHEKYQCKDCDECFASKNKFFDHRQTVHNVRCVERRHQCSECGQWFPRPRLLMLHFRIHTGEKPHECAHCGKRFHTPRGYARHLVTAHAPPASKEGGEDIAGDPTQQQDDGSTPAAGSAPPPPRRQVPCPECEQVFSSKHCLERHVLRAHRRPGDLRHLCSECSLSFTCKIPKATCCVLQENLKRHEQLVHGDEHSALRFVCDRCGVSLRSLNALKDHAASVHEHSRAFVCGVCGAAFLRNSDLTRHMTSHSEARPHACRTCGQAYKRSSHLRRHRASAHGDVGGDSRSAGKYRRANGGSGSASQKPSSSPSSPPAGSQPSPRAPAPTPSPQDDTILKLALSKEREGDPDDPEPASPSPFPGNILHTIVSYNVGGGEGGEGNFPSTTLSSDTSESQLVFTTSVPVSSINIDQSHTVLTLTFDPLMESDASDLKLDASFQSEKNAAHRQEESLLLDPTVSSHLPLDCMTDSLYIPTVSLEQPSTLISSADTVLTSSCVMRKTEDATLGSTLIQSNDTSTLGNNSTLFGSVDGAFGSLTNAEVLLNMQSHMDTLSNTLNISVSDCESLLSSQNTHSQTSPSMILTQESDESIGLDGANTIAILPDFTQLPNFSFLNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -