Lko_23243-RA
Basic Information
- Insect
- Laupala kohalensis
- Gene Symbol
- -
- Assembly
- GCA_002313205.1
- Location
- NNCF01128896.1:108160-134954[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.052 13.6 0.1 2 23 562 585 561 585 0.96 2 10 0.0024 0.11 12.5 3.2 1 23 591 615 591 615 0.98 3 10 0.00046 0.022 14.8 1.4 1 23 621 645 621 645 0.95 4 10 0.069 3.3 7.9 0.2 2 23 652 675 651 675 0.96 5 10 0.0001 0.0047 16.9 1.0 1 23 682 706 682 706 0.98 6 10 0.0027 0.13 12.4 0.7 2 23 714 737 713 737 0.94 7 10 1.3e-05 0.00061 19.7 0.7 1 23 743 767 743 767 0.93 8 10 7.3e-06 0.00034 20.5 1.9 3 23 775 797 773 797 0.93 9 10 0.0017 0.08 13.0 0.9 1 23 803 831 803 831 0.94 10 10 0.23 11 6.3 5.1 1 23 908 932 908 933 0.94
Sequence Information
- Coding Sequence
- ATGTCTTGTAAAGGAATTCTTCCTCAAACCCGAAATGGTAGCGGGCAAATTGAAGACTTACTTAAAAAGGAACCTCCGAACCCGGCTAGCTACCGCAAAAATGCAGAATTCAAATTGGGAGGTCCGAGGATACTTTTGCCGGAAAATAATCAAGATGTCGCGGAAGATGGTGTCAATGGCGAGAATATTTCGCCTAGTGTACTGGAAATCTCTTCTTCAAATTTCACCCTCCCTTCATCTGAGATAACCTCAGATATTGGTGTTAGTGTAGATGACTGGTTTAAAACAAGAAGTGACGGAATGGATTTAGATTCAGTATTAACTACGGATGAATTGGGAGTCAATGACTTGGAAGGCTACCAATTTACTCCTTCCAAGGAAAACGTGGATATGTGTGTTGTTACTAACATTTGTGACATGGGTTTGGGGTTTGATTTACCTGTTAGCATatgtgataaaagaaataaaattttgggtgAATGTGAGCGTGAAGTGAATAGTGTTGAATATGAGGGAACATTTTTAGATGACTTTGATAATAGTGTTGTGGACAAAAATTTATTAGTGAAAAGAACAGctacaaaattaaatgaagactGCAAAGAATTGAACAGTAATTACATCCTGCAGACTGAGGACAAAGCAATGAAGGATGTTCAAAATAGTGCTTGGAGTGATAATGAAGATGTGTTTATGGAGATAGAACCAGTGATCCTTACTGATGACAATGCAAATTGGGAATCTCTATCTACAGGGAGTCAACATAGCACTGATTATGAATCAGAGAAAGATGACTTCCCAGAATTCAGTTTATTGACATTTCAAGTAGATAATGCGGAAGGtgtgaatgtaataaattctCTATCTCAGATGGATTGTATCAGTGAAAACAATATTGTACCTGCTAATTATATAGTTTCTGATGATTGTGTTCTGTCTGATGctgtttctttctctcacttGAGTGAATCTGAACCTCAAATTGAGGGTATTACAAGACCTCGAGTTATACGTGGGAACAAGTCTGCAATAAAGAAGGAGAAGTGTGAAAATAACAGTGAAGTGCTAGTGGAAGAATGTGTTGTAGAATCGCTCCCTATCAATAAGAGTAACTTTACAAACAAGAAATCTACCATTGGTAATGGGACTTCAGCCTCAAATCCTCGTAGCTTACTTAGGCTAACACCCAAATCAACTAATCTTAAATCTGCAATAGAACCCGATTCGTTGGTGAAGAAAGTTTCAGAGACCTGTAATCTATTACCTACCCCTGTGAAAGCAGAGATACTTGAAAATGAGAACAGTCTTCGTGTAGGTTCCTCCTCAAAGAAGGCTCCAGCAATGACAATTATTGCGATTTCTACTGATAAGTTGAAGAACACTacagaaatagtaataaatacatcCCAGGGTGAACAAAAGTTCAAAGGGAAAACGTCTGATTTTATAAAAGCTACCTCTAAACTTATAAGTAATCAACCATTGAAAGCCAGGATTGGCCAGTCTTTGAATTTATCTAATGTGGAGGTGTCACAGGATGAATTAGTGCAGCAGAGTGAAAATGTACATTTAATCTTTCTTGCAGATGAGCAACCCATCACAGAAGCTCTTGCCGCCCTGGGTATTGACCTGTCATCATTGAACTATGTCACTGCTGGTGGAAATGGTGGTTACAAACTGTGGGAATGCCCCACTCAAAATTGCAATAAACTATATCCACGCCTTAGCCTTTTGAAGGTTCACATCCTAACACATTATGGTGTTAGGCCATATCGATGTGATATTCCTGGTTGTCAATGGACGTTTTACACTTGCTTCAAGTTAAAGCGACATAAAGAAACCCATCTTAAAAAGAAAGcatttattTGTCCTGTGCCATCTTGTGGTCATAGATTCACCACTATTTACAATCTGAAAACACATCGTAAATTACACGAGAGGCCAGCAAAATTACAGTGCCCGGTGGTTGGCTGTGATGCTCATTTTCAAACGAAACGAGCGGTAGAGCTTCATGTGAAGAAGCATGGTATTTCGCATGCTCCTTATCAATGTACATTTGCTGGCTGTGGCAAACGATACTATTCAAGCAACACCCTCAATAGCCACGCTCGGAGTCATCAGCATAGAGAGGAGGAGGTGCGTTGCCAGTGGCCTGATTGTGGCAAATGGTTTGACAAACCATGCAGGTTGAAGGCTCACATGCGCACTCACACTGGAGATAAACCATACCTTTGCACTTATGAGAATTGTGGATGGGCCTTTTCTAGTGCCAGTAAATTGAAGCGCCACCAGCAGAAACACACCAATGAAAGGAAGTTCCTCTGTTCATTTGAAGGGTGTGGAAAGTCCTTTATGCGTTCCGAACATCTCAAGGAACATATGCAGACTCATGCTGGGGAACGCAGCTATCAGTGCACTGTGGAGAGTAAGTCTTACTATTGTGGAGTAAAATTCACTGCAAAGAGTAGCCTGTATGTTCACCTGAAGAAACACAAGCTGCAGATGAAGGATGGCAAATTGGCCATGGAATCGCGAACTGTTTCCCGATTCCAGACTACAAACAGTGCATCCACATCAACCTCCACTGCAGGAGCCAAGGTCAATGCATTGGGACCCTCTGTCCAGCAGCAGAAGAAATCAAACACGAATGGTGTTACAAAGGGTTTGAGCTCCAATGGACCTGTGCAAGTGGTGATGCCGGTAACGGCTAGCAGTAATTCATTCCATTGCCCTGTCGATTCATGTCCCAAGAGTTACAGCTGCAAGGCGAGTTTACGGCAGCACCTTCTCAAACACCATACTCCTGTATTGGCGTCTGATGCTAATCAGCTGGATTATGTTACATCTTTGTTGCTCTCTGGAGGATCTAATCAACAAGTGGTTATAAGCTCTTCAGATAATGATATAGCTGCAGTACAAGGCTCTGTGTGCACTCGTGATATGGAGCGCCACTGGAATAAAATTAGAAGGTTAtgtctctttccttttcttacagatgtggaaaataataattcttctgGATTATTACCTACGGGTGCTATGTATGAAACAGGAGACAGTTATCCCTCTGAATATATCAACACTGGTACGTTGATAGATGGAACAAATGGTCATACTGTTTTGCTAAGTGCTGATGAGGTTGCCTCAGAAGCTGCTCTAGCGGAAGCAGAAGCTGAACTTCGTCTTGCAACAGAGTCTATTAAGGATCCCTTGCTCGTGAACTTTCCTGGAAAAGTACTTCCAGTACAAAGAACTGGTAGAAATATTCTCGACTGTAGATTAGATGTTACTAAATTGTTGTTCTGCTCTTTGCAGGATGATTACCAAACCAGTCATGATGTGCCCTTTGATATTCCCGAACTGGTTTCTACTGAAGTTAAAGTACCTGATGATCCCACTTGCCGTTCTGCTCGCACCTGTCTCACGTTCCAAGACATTGTCCAGAGGAAGCGACCTCATGTGTCTGCAAACTCTGCAACTCCACGCAAAGCAATTGCCGGTGGCACACCCACCATCTCCCATATTGACAACTCTCTCACTGCGGAAGAGACTTTGCGATTGGATGGAAGCGAGGCCGCCACTATGGCAGGAACCATAGCTGGCCTTAGGGATCCTGTTGCAGCCTTGAGACTTCCTCCAGACATGGCAGGGCTCCTGGCACCCACTGCAGATCTGAATTTACTCTTGCAGgaggaTTCCGGATTGCAAGTACTTCTGCTAGATGGGAACGAAGCCCAAAATTACGCAGAGACCAACATCAACCTCAGGGATCTTGATTGA
- Protein Sequence
- MSCKGILPQTRNGSGQIEDLLKKEPPNPASYRKNAEFKLGGPRILLPENNQDVAEDGVNGENISPSVLEISSSNFTLPSSEITSDIGVSVDDWFKTRSDGMDLDSVLTTDELGVNDLEGYQFTPSKENVDMCVVTNICDMGLGFDLPVSICDKRNKILGECEREVNSVEYEGTFLDDFDNSVVDKNLLVKRTATKLNEDCKELNSNYILQTEDKAMKDVQNSAWSDNEDVFMEIEPVILTDDNANWESLSTGSQHSTDYESEKDDFPEFSLLTFQVDNAEGVNVINSLSQMDCISENNIVPANYIVSDDCVLSDAVSFSHLSESEPQIEGITRPRVIRGNKSAIKKEKCENNSEVLVEECVVESLPINKSNFTNKKSTIGNGTSASNPRSLLRLTPKSTNLKSAIEPDSLVKKVSETCNLLPTPVKAEILENENSLRVGSSSKKAPAMTIIAISTDKLKNTTEIVINTSQGEQKFKGKTSDFIKATSKLISNQPLKARIGQSLNLSNVEVSQDELVQQSENVHLIFLADEQPITEALAALGIDLSSLNYVTAGGNGGYKLWECPTQNCNKLYPRLSLLKVHILTHYGVRPYRCDIPGCQWTFYTCFKLKRHKETHLKKKAFICPVPSCGHRFTTIYNLKTHRKLHERPAKLQCPVVGCDAHFQTKRAVELHVKKHGISHAPYQCTFAGCGKRYYSSNTLNSHARSHQHREEEVRCQWPDCGKWFDKPCRLKAHMRTHTGDKPYLCTYENCGWAFSSASKLKRHQQKHTNERKFLCSFEGCGKSFMRSEHLKEHMQTHAGERSYQCTVESKSYYCGVKFTAKSSLYVHLKKHKLQMKDGKLAMESRTVSRFQTTNSASTSTSTAGAKVNALGPSVQQQKKSNTNGVTKGLSSNGPVQVVMPVTASSNSFHCPVDSCPKSYSCKASLRQHLLKHHTPVLASDANQLDYVTSLLLSGGSNQQVVISSSDNDIAAVQGSVCTRDMERHWNKIRRLCLFPFLTDVENNNSSGLLPTGAMYETGDSYPSEYINTGTLIDGTNGHTVLLSADEVASEAALAEAEAELRLATESIKDPLLVNFPGKVLPVQRTGRNILDCRLDVTKLLFCSLQDDYQTSHDVPFDIPELVSTEVKVPDDPTCRSARTCLTFQDIVQRKRPHVSANSATPRKAIAGGTPTISHIDNSLTAEETLRLDGSEAATMAGTIAGLRDPVAALRLPPDMAGLLAPTADLNLLLQEDSGLQVLLLDGNEAQNYAETNINLRDLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -