Basic Information

Insect: Laupala kohalensis
Gene Symbol: -
Assembly: GCA_002313205.1
Location: NNCF01131160.1:44475-68234[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.9 2.8e+02 1.9 0.9 2 15 235 248 234 253 0.79

2 12 0.00076 0.036 14.1 0.6 2 23 362 384 361 384 0.95

3 12 0.0039 0.18 11.9 0.9 2 23 391 413 390 413 0.95

4 12 0.24 11 6.3 0.2 1 19 453 471 453 475 0.88

5 12 5.8e-06 0.00028 20.8 0.5 1 23 489 511 489 511 0.96

6 12 0.66 31 4.9 3.2 1 23 517 539 517 539 0.97

7 12 3.3e-05 0.0016 18.4 1.3 1 23 557 580 557 580 0.93

8 12 0.062 2.9 8.1 0.1 3 13 612 622 610 624 0.89

9 12 0.002 0.096 12.8 0.0 3 23 625 646 624 646 0.96

10 12 0.031 1.4 9.1 2.3 1 23 652 674 652 674 0.95

11 12 8e-08 3.8e-06 26.6 2.0 1 23 680 702 680 702 0.99

12 12 2.3e-06 0.00011 22.0 2.1 1 23 708 731 708 731 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.9	2.8e+02	1.9	0.9	2	15	235	248	234	253	0.79
2	12	0.00076	0.036	14.1	0.6	2	23	362	384	361	384	0.95
3	12	0.0039	0.18	11.9	0.9	2	23	391	413	390	413	0.95
4	12	0.24	11	6.3	0.2	1	19	453	471	453	475	0.88
5	12	5.8e-06	0.00028	20.8	0.5	1	23	489	511	489	511	0.96
6	12	0.66	31	4.9	3.2	1	23	517	539	517	539	0.97
7	12	3.3e-05	0.0016	18.4	1.3	1	23	557	580	557	580	0.93
8	12	0.062	2.9	8.1	0.1	3	13	612	622	610	624	0.89
9	12	0.002	0.096	12.8	0.0	3	23	625	646	624	646	0.96
10	12	0.031	1.4	9.1	2.3	1	23	652	674	652	674	0.95
11	12	8e-08	3.8e-06	26.6	2.0	1	23	680	702	680	702	0.99
12	12	2.3e-06	0.00011	22.0	2.1	1	23	708	731	708	731	0.98

Sequence Information

Coding Sequence: ATGGAGAATTTTGCGGAACATAAACAAGGAGAGAAAGGGTTACTTCTTTCAAAACTGCTCAATCCCAACATTACTGTTAATTCTCTCATTATCAATGGTATGCCACAAAAACCGACCGAGAGATGTGGATTCAAGCAGATATGCCGACTCTGTGCAAATGTAGTTGATAGAGCAACAAGCTTATTTGTAGACATGGATAAAGGAGAAAATTTGgttgacaaaattaattcatgtttgcCTATTactgtaaatGAAAATGATGCATTACCAAAACAACTTTGCACTTCTTGTGCTGAAAAATTGCATGAATGTTTTCAATTCTCAATGAGCAGTATCTCAGCAGAGCAAAAATTGATGTACCCAAAATCTACAACTCCAACCATGAACTGCCCAAACACAAGTAGCAATACTGTTAATTCCAGAATTTGCAATATGAATTACAAGTGTCCTATTTGTGTTGAGGGCTCTTTATGgcttattaataaacaaaatcaagAGACAGAAAAGTATGAGGGTGCTGATGACTTGAAATTTAATCACTCAAATATACCCTCTACCTGCTCTGAGAATGCAGAATGTCGGgcagaagtaaaaagaaaaagtttaattgagagtgaaggagaaaaatattttaccgaaTTAAATGTCACAGCAAACCCTGCAGATGAAGatataattcatgtattaaataatGTCAATCTTTCATGTAGAATTTGCAATAAGTTATTTCACACAGCTGAAGTACTTAACCATTGCAAGTTTCACGCTTCTTGCAACTTCTACCCATGTGTACTTTGTGAtaacatatattttgttaatgaagCTCAGATAGAAATACATCTCTCCAGTCGTCATAATATGGTGAgttgtaatattaatttgaaagaacAAATTCAAGAAGTTAATTCGCAATGTGagtatatgttaaaaaataatattttaccaaataagaattttgaaacagGCTTTGTTTTGAATCTTGAAGATAATGAAAAGTCTTCAACAGTAAACTTAAAAATCTGCAGTGATATAGGAGAGGACGACATGGTTTATGATTCCATTATTATTCCGGAATATGGAAAGAGCTGTGAAATTTGTGGCAAACATTTTGAGTCAGAGGCACTCATGACTCTTCATGTGAAAAGTGAACATATATTGGATAATGGGTCACAATGTACAGAATGcgaccaatattttgaaacttccaaATTTCTTGAAGAACACAAGCAAAATGAGCATGTACCAGGTAAATCCTTTCAATATGAATATTGTGGTGTTACTTTTAATGAGCAAACTCAagcaaagaaaactaaaaaatacctTAATTCAGAGAACTCTTCAGATCCTCAAGTTTGTTATTTCTGCAGTGAATGTAAAGCAGTTTTCCCAGATCCCAATCAAATATCAGAACATGACTCAATGCACCAACAATATACTGTAAGCACTGATTATGTTTATGATGTTTATAAATGTGAGTATTGTGATTTGTCATTCATCAATACAGATAATTTGAAAAGTCATGTCGCTCAGCACATAGGAGACTTACCATATATGTGCCTCCTTTGTAACTTGCATTTTGAATCTTACTATAAAGTAAtggaacacaaaaaaaatcatgcattgaacaaaaataatccaAGTACTAAATTGTTTTCCATTCCAATACATTATTTGTGTGAATTTTGTGGCAAAAGTTTCAGACAGTGGgaatatttatacattcatagATACAAATCTCACCTCAATGGAAGAACACCATGTACCGATGAGAATTCCAAACCGCAAGGGGAAAATTTACCTTTCTCAAATCATAATGGTCAAACTCATCTGTTATGTGATATTTGTGGCAAAACCTTTGAATCACAAGCATTATGTGAGTACTGCGGCCAAGCTTATAATGTTAAAGGAGATTTAGATAATCATCGTCGTGCAAAACATACCAAAGAGAGACCGTTTAAATGTGAGacatgtcaaaaatcatttctgacAAGTAGTGTATTTTATCAGCATAGAATATTACATACAGGAGTGCGTAAATACAAATGCATGCATTGCGATAAATCTTTTGCCAGATGGAATGCTTTGAGATTACACATACGTACCCACACAGGTGAGAAGCCATATGTTTGTCATGTTTGTCAGAGAGGTTTTGCCCAAAAAGGTGATATGAAAAAACACATGAAAACTCAACATAATATTCTGGATaCACTAACTGAGAAAATGCCGAACCGTCCAAGGAAAGAGGGTAATAATTAG
Protein Sequence: MENFAEHKQGEKGLLLSKLLNPNITVNSLIINGMPQKPTERCGFKQICRLCANVVDRATSLFVDMDKGENLVDKINSCLPITVNENDALPKQLCTSCAEKLHECFQFSMSSISAEQKLMYPKSTTPTMNCPNTSSNTVNSRICNMNYKCPICVEGSLWLINKQNQETEKYEGADDLKFNHSNIPSTCSENAECRAEVKRKSLIESEGEKYFTELNVTANPADEDIIHVLNNVNLSCRICNKLFHTAEVLNHCKFHASCNFYPCVLCDNIYFVNEAQIEIHLSSRHNMVSCNINLKEQIQEVNSQCEYMLKNNILPNKNFETGFVLNLEDNEKSSTVNLKICSDIGEDDMVYDSIIIPEYGKSCEICGKHFESEALMTLHVKSEHILDNGSQCTECDQYFETSKFLEEHKQNEHVPGKSFQYEYCGVTFNEQTQAKKTKKYLNSENSSDPQVCYFCSECKAVFPDPNQISEHDSMHQQYTVSTDYVYDVYKCEYCDLSFINTDNLKSHVAQHIGDLPYMCLLCNLHFESYYKVMEHKKNHALNKNNPSTKLFSIPIHYLCEFCGKSFRQWEYLYIHRYKSHLNGRTPCTDENSKPQGENLPFSNHNGQTHLLCDICGKTFESQALCEYCGQAYNVKGDLDNHRRAKHTKERPFKCETCQKSFLTSSVFYQHRILHTGVRKYKCMHCDKSFARWNALRLHIRTHTGEKPYVCHVCQRGFAQKGDMKKHMKTQHNILDTLTEKMPNRPRKEGNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -